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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00558

Bact-Vir

Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00558

Identity

Kingdom:
phage

Quality

87.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-57
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 60.0 5.95e-01 94.5% 96.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 54.0 5.79e-01 87.3% 100.0%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 55.0 5.40e-01 89.1% 100.0%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.77e-01 94.5% 98.2%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 61.0 5.02e-01 100.0% 62.2%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 57.0 5.50e-01 94.5% 92.1%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 56.0 5.63e-01 90.9% 98.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 58.0 5.47e-01 98.2% 95.6%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 55.0 5.29e-01 92.7% 84.6%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 55.0 5.28e-01 92.7% 98.5%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 58.0 5.01e-01 96.4% 67.9%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 54.0 5.22e-01 90.9% 89.1%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 54.0 4.93e-01 92.7% 72.4%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 5.45e-01 98.2% 96.8%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 54.0 5.30e-01 94.5% 93.5%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 54.0 5.33e-01 92.7% 91.5%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 55.0 5.05e-01 100.0% 89.3%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 53.0 5.18e-01 92.7% 91.7%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 4.89e-01 96.4% 90.8%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.64 52.0 5.36e-01 90.9% 98.0%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.63 39.0 3.95e-01 90.9% 61.4%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.38e-01 92.7% 71.7%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 47.0 3.92e-01 81.8% 100.0%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.62 44.0 3.76e-01 78.2% 78.6%
5jenA02 3.90.640.20 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Heat-shock cognate protein, ATPase 0.61 49.0 4.07e-01 89.1% 77.8%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.61 46.0 4.56e-01 92.7% 78.0%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.61 48.0 3.27e-01 85.5% 33.2%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.61 43.0 3.53e-01 94.5% 38.1%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 50.0 4.78e-01 98.2% 86.8%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.68e-01 100.0% 78.1%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.59 39.0 3.77e-01 85.5% 58.5%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.12e-01 94.5% 66.7%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.59 45.0 4.58e-01 92.7% 87.0%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 42.0 4.10e-01 83.6% 69.4%
2basA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 42.0 3.30e-01 76.4% 89.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.48e-01 96.4% 81.9%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.68e-01 90.9% 98.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.51e-01 96.4% 81.5%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 2.60e-01 87.3% 18.4%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.56 40.0 3.44e-01 78.2% 90.5%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.19e-01 96.4% 88.9%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.54 45.0 3.64e-01 94.5% 87.5%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.03e-01 81.8% 32.8%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.54 44.0 3.75e-01 89.1% 68.1%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 42.0 2.65e-01 85.5% 20.7%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.54 40.0 4.00e-01 94.5% 82.5%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.81e-01 94.5% 98.4%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.21e-01 90.9% 95.9%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.44e-01 94.5% 100.0%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.52 41.0 2.82e-01 83.6% 33.0%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 2.93e-01 96.4% 90.6%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 2.61e-01 96.4% 94.4%
4x83A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.06e-01 76.4% 87.3%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.52 39.0 3.90e-01 94.5% 81.7%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.51 42.0 2.62e-01 100.0% 51.4%
2d5wA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.51 40.0 2.71e-01 90.9% 94.4%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 2.98e-01 100.0% 51.5%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3263489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 64.0 6.10e-01 100.0% 95.4%
3931418 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.90e-01 94.5% 93.3%
3933965 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 58.0 5.69e-01 90.9% 93.1%
3585447 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 62.0 5.48e-01 100.0% 75.0%
3914346 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 62.0 5.24e-01 100.0% 67.8%
3214149 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 59.0 5.68e-01 98.2% 92.3%
4505797 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 52.0 5.02e-01 92.7% 70.8%
3911321 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 60.0 5.36e-01 100.0% 73.8%
3399284 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 59.0 5.61e-01 96.4% 87.7%
3755099 604.1.1.97 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SH3_1 0.69 60.0 5.19e-01 98.2% 68.2%
162441 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 61.0 5.61e-01 100.0% 83.1%
4056584 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 57.0 5.07e-01 92.7% 67.5%
3487686 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.01e-01 94.5% 65.9%
4483819 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 56.0 5.26e-01 92.7% 78.6%
3898363 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 58.0 5.35e-01 94.5% 80.0%
3543889 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 59.0 3.53e-01 100.0% 14.8%
3886646 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 58.0 5.56e-01 96.4% 87.7%
3623786 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 57.0 5.40e-01 92.7% 83.1%
4969566 4.1.1.301 beta barrels › SH3 › SH3 › SH3 › MJ1316 0.68 57.0 5.09e-01 96.4% 66.3%
3259033 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 58.0 5.71e-01 98.2% 96.7%
3254502 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 57.0 4.84e-01 96.4% 67.4%
3269589 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 58.0 5.40e-01 96.4% 81.4%
5022745 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 4.83e-01 100.0% 77.1%
3899851 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 54.0 5.16e-01 89.1% 81.5%
3267416 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 58.0 5.22e-01 100.0% 76.2%
4020558 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.60e-01 100.0% 93.8%
3567457 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 57.0 5.32e-01 96.4% 81.4%
4104114 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 58.0 5.53e-01 98.2% 87.7%
3391702 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 55.0 4.90e-01 92.7% 68.8%
3539147 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 58.0 5.40e-01 98.2% 81.4%
4133335 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 57.0 5.58e-01 96.4% 93.3%
3566206 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 57.0 5.30e-01 96.4% 81.4%
3750163 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 55.0 5.13e-01 92.7% 78.6%
3574751 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.29e-01 83.6% 100.0%
3483375 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.19e-01 100.0% 93.3%
3719452 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 53.0 4.99e-01 90.9% 77.1%
165781 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 54.0 5.08e-01 92.7% 79.7%
3573775 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 57.0 5.43e-01 100.0% 92.3%
3366511 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 57.0 5.42e-01 98.2% 89.2%
3906249 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 56.0 5.13e-01 98.2% 77.3%
3903323 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 58.0 5.23e-01 100.0% 77.3%
3539094 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 4.96e-01 96.4% 82.5%
3882808 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 56.0 5.16e-01 100.0% 78.7%
158911 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 56.0 4.69e-01 98.2% 69.1%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 54.0 5.13e-01 92.7% 93.8%
3748846 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 55.0 5.22e-01 94.5% 86.2%
3628460 3308.1.1.0 beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme 0.65 48.0 4.20e-01 78.2% 92.5%
3269758 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 55.0 4.98e-01 100.0% 76.2%
3713613 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.24e-01 96.4% 92.3%
4527355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 52.0 4.91e-01 92.7% 89.9%
3933788 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.16e-01 94.5% 86.7%
165220 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 52.0 4.83e-01 94.5% 79.5%
3883895 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 56.0 4.61e-01 100.0% 89.0%
3596004 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.21e-01 98.2% 46.4%
3500448 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.10e-01 98.2% 81.5%
3748837 330.9.1.1 a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p › Tnp_22_dsRBD 0.63 42.0 3.72e-01 85.5% 47.5%
4937731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 5.02e-01 94.5% 86.7%
4662294 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.50e-01 92.7% 78.2%
4644007 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.62 52.0 5.16e-01 98.2% 89.8%
3223821 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.61 51.0 3.89e-01 96.4% 64.4%
3164374 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.61 43.0 4.45e-01 90.9% 84.0%
3519861 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.83e-01 90.9% 83.3%
4029951 220.1.1.310 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29397, PF29398 0.60 50.0 3.68e-01 92.7% 62.1%
540 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.60 46.0 4.85e-01 94.5% 100.0%
5029655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.92e-01 98.2% 88.3%
5001903 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.30e-01 98.2% 70.0%
4278911 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.59 44.0 4.59e-01 83.6% 92.0%
3510946 2.1.1.92 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_D_N 0.58 42.0 3.36e-01 80.0% 76.5%
3929784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.70e-01 90.9% 98.0%
4467360 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.71e-01 100.0% 95.0%
1175057 4.1.1.145 beta barrels › SH3 › SH3 › SH3 › Crb2_Tudor 0.55 45.0 3.95e-01 96.4% 72.7%
5049139 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.55 44.0 3.76e-01 94.5% 65.0%
5033892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.15e-01 92.7% 76.9%
3604145 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 42.0 4.18e-01 100.0% 85.0%
3176528 3922.1.1.157 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › WSD 0.53 42.0 2.99e-01 92.7% 72.3%
3610569 2498.1.1.14 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.53 42.0 2.48e-01 85.5% 26.7%
1870422 4337.1.1.0 a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.53 36.0 3.81e-01 72.7% 97.8%
5004476 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 42.0 4.03e-01 94.5% 76.9%
4024018 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.52 42.0 3.22e-01 90.9% 39.2%