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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00565

Bact-Vir

Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00565

Identity

Kingdom:
phage

Quality

80.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-65
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 53.0 4.85e-01 91.8% 95.2%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.64 55.0 4.07e-01 100.0% 47.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 57.0 4.15e-01 100.0% 92.2%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.63 46.0 4.65e-01 91.8% 81.7%
5d79A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.61 42.0 3.04e-01 72.1% 56.7%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 54.0 3.46e-01 100.0% 61.7%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.61 48.0 4.44e-01 86.9% 68.4%
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.61 51.0 3.57e-01 100.0% 59.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 50.0 4.69e-01 91.8% 73.7%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.61 51.0 3.39e-01 100.0% 66.4%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 53.0 3.42e-01 100.0% 59.3%
1vq3B00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.60 49.0 4.41e-01 90.2% 91.7%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.60 51.0 4.24e-01 100.0% 87.2%
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.60 48.0 4.45e-01 93.4% 100.0%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 41.0 3.11e-01 100.0% 27.4%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 50.0 4.42e-01 100.0% 63.8%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 48.0 4.65e-01 95.1% 90.1%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.58 40.0 3.10e-01 100.0% 33.1%
2h41A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 3.94e-01 100.0% 55.8%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 46.0 4.35e-01 91.8% 73.7%
2mfaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.57 37.0 3.80e-01 86.9% 68.4%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.57 45.0 4.18e-01 93.4% 100.0%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.12e-01 100.0% 58.2%
3l5iA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 4.10e-01 100.0% 63.6%
4cbgD02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 3.36e-01 88.5% 39.1%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 46.0 4.50e-01 100.0% 88.1%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.74e-01 100.0% 59.1%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 42.0 3.53e-01 91.8% 47.7%
3sonA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 45.0 3.57e-01 100.0% 58.9%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 43.0 3.26e-01 93.4% 51.8%
1va9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.64e-01 100.0% 47.5%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 43.0 3.16e-01 86.9% 100.0%
1zoyB01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.54 45.0 3.84e-01 96.7% 81.1%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 44.0 3.73e-01 100.0% 59.0%
4fcaA01 2.60.120.1250 Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 0.54 38.0 3.28e-01 100.0% 44.0%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 40.0 3.95e-01 96.7% 78.5%
6u7tA03 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 40.0 3.25e-01 82.0% 71.9%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 44.0 2.91e-01 100.0% 22.8%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 44.0 2.85e-01 95.1% 21.7%
7emfR01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 45.0 3.31e-01 100.0% 56.0%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 43.0 3.22e-01 100.0% 33.5%
3vmnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 46.0 3.80e-01 100.0% 57.7%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.52 44.0 3.27e-01 100.0% 52.3%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 45.0 3.33e-01 100.0% 60.4%
1kf6B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.52 44.0 3.77e-01 98.4% 79.8%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 40.0 3.79e-01 91.8% 78.5%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.51 36.0 3.25e-01 75.4% 59.1%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 40.0 3.31e-01 91.8% 49.6%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.66e-01 100.0% 62.5%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3399490 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.73 52.0 5.15e-01 91.8% 70.8%
3508212 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.73 60.0 5.80e-01 91.8% 82.9%
3732197 11.1.1.643 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 0.69 56.0 4.61e-01 100.0% 49.1%
3582833 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.69 52.0 4.31e-01 82.0% 61.8%
3702557 3945.1.1.0 alpha superhelices › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain 0.67 59.0 4.65e-01 100.0% 62.3%
4680886 69.1.1.14 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint_2 0.66 57.0 4.20e-01 98.4% 57.6%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 52.0 5.45e-01 90.2% 96.4%
3174620 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.65 55.0 3.53e-01 96.7% 61.9%
3668699 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 54.0 4.96e-01 93.4% 70.0%
5029082 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 51.0 3.82e-01 90.2% 57.6%
4128974 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 53.0 4.87e-01 93.4% 78.8%
3276865 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.64 57.0 4.81e-01 100.0% 92.0%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 52.0 5.29e-01 91.8% 93.3%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 52.0 5.34e-01 91.8% 94.9%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.63 53.0 4.95e-01 93.4% 78.7%
3197773 10.12.1.52 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.63 54.0 3.45e-01 100.0% 27.8%
3965010 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.62 54.0 4.81e-01 100.0% 90.0%
3892842 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 51.0 5.02e-01 91.8% 90.8%
3689024 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 48.0 3.94e-01 95.1% 42.3%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 51.0 4.64e-01 91.8% 68.7%
1153578 75.1.1.1 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase 0.62 43.0 4.18e-01 73.8% 77.1%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 50.0 5.14e-01 90.2% 94.8%
3396683 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.62 47.0 4.39e-01 93.4% 65.8%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 50.0 5.01e-01 91.8% 87.5%
3339376 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 45.0 3.73e-01 91.8% 42.6%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 51.0 4.79e-01 93.4% 77.3%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 50.0 4.23e-01 93.4% 54.6%
3686997 304.9.1.6 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 0.61 52.0 4.98e-01 95.1% 97.1%
5030993 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 51.0 4.69e-01 93.4% 73.8%
4084879 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 48.0 4.42e-01 91.8% 70.6%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.61 51.0 4.26e-01 93.4% 54.3%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 50.0 4.74e-01 93.4% 78.7%
3345090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 50.0 4.21e-01 93.4% 54.6%
2106284 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 50.0 4.88e-01 93.4% 89.6%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 49.0 4.76e-01 93.4% 84.3%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 50.0 4.24e-01 93.4% 58.4%
3470550 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 53.0 3.39e-01 100.0% 52.1%
3592488 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 53.0 3.30e-01 100.0% 38.2%
2512518 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 49.0 4.20e-01 93.4% 58.4%
3900025 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 48.0 4.68e-01 91.8% 98.6%
1503409 220.3.1.1 beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop 0.59 49.0 3.80e-01 91.8% 53.0%
4943401 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 47.0 4.32e-01 93.4% 69.4%
5079276 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 51.0 4.25e-01 100.0% 96.4%
4216863 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.51e-01 100.0% 80.0%
3551719 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 48.0 4.58e-01 95.1% 85.3%
223776 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.58 46.0 4.42e-01 91.8% 76.1%
4146398 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.58 40.0 2.93e-01 73.8% 25.9%
4329174 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.58 41.0 3.04e-01 75.4% 40.0%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.58 45.0 4.63e-01 90.2% 94.8%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.58 46.0 4.65e-01 91.8% 88.9%
3406669 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 3.59e-01 90.2% 47.0%
4026479 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.57 46.0 3.70e-01 91.8% 52.3%
3881982 2492.1.1.14 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC_N 0.57 46.0 3.42e-01 98.4% 84.2%
5046724 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 47.0 3.90e-01 96.7% 89.6%
3966635 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 43.0 3.16e-01 85.2% 99.4%
3650990 274.1.1.44 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 0.55 46.0 3.76e-01 100.0% 59.2%
4030871 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.55 44.0 4.27e-01 96.7% 78.6%
3905094 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 46.0 3.62e-01 96.7% 50.4%
4472409 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.55 38.0 2.83e-01 75.4% 26.5%
5005269 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.54 45.0 3.52e-01 95.1% 65.0%
3700104 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 44.0 3.76e-01 100.0% 61.7%
3679515 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 33.0 3.71e-01 73.8% 84.4%
3430645 5.1.3.159 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.54 42.0 2.82e-01 95.1% 97.7%
3265857 299.1.1.0 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.54 44.0 3.70e-01 93.4% 53.6%
3994984 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.54 47.0 4.66e-01 100.0% 96.9%
3483062 221.1.1.116 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 0.53 39.0 3.31e-01 93.4% 42.5%
3411558 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.53 43.0 3.40e-01 93.4% 50.0%
3522399 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 45.0 3.78e-01 100.0% 55.2%
4003982 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.52 39.0 3.40e-01 98.4% 48.2%
3568886 2492.1.1.29 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC4_like 0.52 42.0 3.06e-01 98.4% 85.1%
3969420 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.11e-01 100.0% 60.8%
3465950 219.1.1.71 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.52 40.0 2.93e-01 90.2% 65.6%
3264069 822.1.1.2 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.52 42.0 4.30e-01 98.4% 100.0%
3852865 2492.1.1.23 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NAD2 0.51 41.0 3.11e-01 100.0% 84.3%