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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00617
Bact-VirIg8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00617
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-62
Domain cluster:
rep: HQ615693.1__AEC53146.1__SCRM01_200__00200__D9-70
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 62.0 | 6.63e-01 | 100.0% | 100.0% |
| 2p4tA00 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 61.0 | 6.17e-01 | 100.0% | 84.5% |
| 2budA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 62.0 | 5.36e-01 | 100.0% | 58.7% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 53.0 | 5.74e-01 | 100.0% | 95.7% |
| 4qucA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.73 | 50.0 | 5.10e-01 | 84.5% | 75.0% |
| 5zwzA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 64.0 | 6.01e-01 | 98.3% | 80.0% |
| 1whmA01 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.71 | 63.0 | 5.93e-01 | 100.0% | 98.6% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.70 | 62.0 | 6.04e-01 | 100.0% | 88.9% |
| 4b6mB00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.70 | 64.0 | 5.73e-01 | 100.0% | 84.8% |
| 1whlA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.70 | 63.0 | 5.31e-01 | 100.0% | 80.0% |
| 2d9uA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.69 | 48.0 | 4.42e-01 | 84.5% | 56.8% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.66 | 58.0 | 4.55e-01 | 100.0% | 57.5% |
| 1dz1A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 48.0 | 4.54e-01 | 93.1% | 65.7% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 54.0 | 4.49e-01 | 98.3% | 100.0% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.61 | 47.0 | 4.83e-01 | 93.1% | 89.3% |
| 2iw3A05 | 2.40.50.990 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 51.0 | 4.20e-01 | 96.6% | 60.6% |
| 1k4nA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 46.0 | 3.30e-01 | 87.9% | 51.9% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.59 | 45.0 | 4.62e-01 | 96.6% | 89.3% |
| 2gcjA01 | 2.30.29.150 | Mainly Beta › Roll › PH-domain like › | 0.59 | 45.0 | 3.64e-01 | 91.4% | 85.8% |
| 6rupA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 46.0 | 3.74e-01 | 87.9% | 91.9% |
| 1azpA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 43.0 | 4.17e-01 | 100.0% | 75.8% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 3.76e-01 | 79.3% | 93.7% |
| 2pmlX01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 49.0 | 3.76e-01 | 96.6% | 75.0% |
| 1uirA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.55 | 41.0 | 4.26e-01 | 96.6% | 94.2% |
| 1inlC02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.55 | 41.0 | 4.07e-01 | 96.6% | 78.1% |
| 1g19A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 42.0 | 2.94e-01 | 89.7% | 93.8% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 41.0 | 3.71e-01 | 89.7% | 94.4% |
| 3o4fC01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.54 | 40.0 | 4.20e-01 | 96.6% | 96.1% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 43.0 | 4.27e-01 | 100.0% | 87.3% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.54 | 40.0 | 4.20e-01 | 96.6% | 94.2% |
| 6toaE01 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.53 | 40.0 | 3.53e-01 | 86.2% | 100.0% |
| 2cmgA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.53 | 39.0 | 4.05e-01 | 96.6% | 96.1% |
| 2e5wA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.53 | 39.0 | 3.98e-01 | 96.6% | 87.5% |
| 1uscA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 44.0 | 3.22e-01 | 100.0% | 79.2% |
| 2b2cA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.52 | 43.0 | 4.22e-01 | 96.6% | 90.6% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.51 | 39.0 | 3.43e-01 | 94.8% | 96.2% |
| 2d37A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 39.0 | 3.03e-01 | 100.0% | 34.2% |
| 2d9wA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 41.0 | 3.52e-01 | 100.0% | 79.1% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025829 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 62.0 | 6.35e-01 | 100.0% | 87.3% |
| 3500542 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.80 | 63.0 | 5.39e-01 | 100.0% | 54.4% |
| 3624304 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.78 | 70.0 | 5.94e-01 | 100.0% | 82.1% |
| 3570369 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.78 | 63.0 | 5.44e-01 | 100.0% | 56.7% |
| 5011394 | 4.1.3.0 ↗ | beta barrels › SH3 › SH3 › Calcium-binding protein CcbP | 0.77 | 58.0 | 5.65e-01 | 96.6% | 72.3% |
| 3629536 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 62.0 | 5.24e-01 | 100.0% | 53.7% |
| 3824699 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.75 | 63.0 | 6.05e-01 | 100.0% | 81.5% |
| 3842631 | 4.1.1.243 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa | 0.75 | 61.0 | 5.70e-01 | 100.0% | 72.9% |
| 3730835 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.74 | 63.0 | 5.36e-01 | 100.0% | 57.9% |
| 5037939 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.72 | 57.0 | 4.20e-01 | 100.0% | 32.9% |
| 3349135 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 64.0 | 5.54e-01 | 100.0% | 66.7% |
| 3177842 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.71 | 64.0 | 4.99e-01 | 100.0% | 59.2% |
| 3806777 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.70 | 64.0 | 5.82e-01 | 100.0% | 80.0% |
| 3495649 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 61.0 | 5.43e-01 | 100.0% | 92.9% |
| 3597248 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 61.0 | 5.18e-01 | 100.0% | 96.8% |
| 3812766 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.68 | 62.0 | 5.78e-01 | 100.0% | 85.7% |
| 2978978 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.66 | 58.0 | 5.40e-01 | 100.0% | 80.0% |
| 3999482 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.66 | 59.0 | 4.74e-01 | 100.0% | 78.2% |
| 3798523 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.66 | 58.0 | 5.23e-01 | 100.0% | 92.5% |
| 3607981 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 57.0 | 5.27e-01 | 100.0% | 77.0% |
| 4040055 | 4.26.1.1 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 | 0.62 | 47.0 | 4.74e-01 | 93.1% | 84.5% |
| 4999741 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 47.0 | 4.28e-01 | 100.0% | 61.3% |
| 4020096 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.61 | 52.0 | 4.03e-01 | 100.0% | 51.4% |
| 4152374 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 51.0 | 4.64e-01 | 100.0% | 72.6% |
| 3910933 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.60 | 46.0 | 4.63e-01 | 96.6% | 83.3% |
| 5080798 | 4.17.1.0 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like | 0.59 | 49.0 | 4.62e-01 | 100.0% | 86.7% |
| 4671845 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.59 | 45.0 | 4.37e-01 | 94.8% | 75.4% |
| 4425420 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.58 | 49.0 | 4.44e-01 | 100.0% | 71.8% |
| 2897014 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.57 | 43.0 | 4.30e-01 | 93.1% | 81.7% |
| 4387111 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.57 | 48.0 | 4.43e-01 | 100.0% | 76.2% |
| 5034832 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 47.0 | 4.52e-01 | 100.0% | 91.4% |
| 4114201 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.56 | 43.0 | 4.21e-01 | 96.6% | 76.9% |
| 4243071 | 3699.1.1.0 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain | 0.56 | 42.0 | 4.29e-01 | 96.6% | 89.1% |
| 4456205 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.56 | 42.0 | 4.28e-01 | 96.6% | 89.1% |
| 4039571 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.55 | 41.0 | 4.24e-01 | 96.6% | 89.1% |
| 3437430 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.55 | 41.0 | 4.06e-01 | 93.1% | 75.4% |
| 4937878 | 2.3.1.0 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like | 0.55 | 44.0 | 3.98e-01 | 91.4% | 78.8% |
| 1030876 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.55 | 42.0 | 4.01e-01 | 96.6% | 71.4% |
| 4336845 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.55 | 41.0 | 4.12e-01 | 96.6% | 81.7% |
| 5041849 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.55 | 41.0 | 4.18e-01 | 94.8% | 89.1% |
| 3305914 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.55 | 35.0 | 3.03e-01 | 87.9% | 36.2% |
| 4076873 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.55 | 41.0 | 4.19e-01 | 94.8% | 87.3% |
| 3328685 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.55 | 41.0 | 4.06e-01 | 96.6% | 76.9% |
| 3973362 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.54 | 40.0 | 3.73e-01 | 96.6% | 61.3% |
| 4163458 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.54 | 40.0 | 4.12e-01 | 96.6% | 89.1% |
| 4971071 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.54 | 40.0 | 4.11e-01 | 96.6% | 89.1% |
| 3948467 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.54 | 43.0 | 4.28e-01 | 100.0% | 87.7% |
| 3987332 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.54 | 40.0 | 4.08e-01 | 96.6% | 89.1% |
| 4561487 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.54 | 40.0 | 4.09e-01 | 96.6% | 89.1% |
| 3698791 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.53 | 44.0 | 4.22e-01 | 96.6% | 85.7% |
| 4259247 | 1.11.1.1 ↗ | beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 | 0.53 | 41.0 | 3.64e-01 | 93.1% | 98.0% |
| 1279189 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.52 | 39.0 | 3.97e-01 | 96.6% | 89.1% |
| 3839465 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.52 | 39.0 | 2.62e-01 | 96.6% | 18.8% |
| 4039507 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.52 | 39.0 | 4.03e-01 | 96.6% | 90.9% |
| 4407054 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.52 | 39.0 | 3.94e-01 | 91.4% | 83.3% |
| 3512537 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 41.0 | 3.44e-01 | 94.8% | 64.3% |
| 3258443 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.51 | 40.0 | 3.20e-01 | 96.6% | 52.7% |
| 5078875 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.51 | 37.0 | 2.45e-01 | 96.6% | 15.9% |
| 5013328 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.51 | 40.0 | 4.00e-01 | 96.6% | 90.0% |