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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00629

Bact-Vir

Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00629

Identity

Kingdom:
phage

Quality

94.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-74
PDB
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 55.0 5.62e-01 86.3% 82.9%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 50.0 4.72e-01 80.8% 62.8%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 52.0 5.47e-01 82.2% 86.4%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 52.0 5.47e-01 80.8% 91.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 44.0 4.51e-01 84.9% 68.1%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 42.0 4.75e-01 80.8% 84.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 43.0 4.63e-01 78.1% 78.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 53.0 5.19e-01 93.2% 78.2%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 45.0 4.82e-01 87.7% 82.3%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 41.0 4.72e-01 80.8% 91.7%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.48e-01 83.6% 72.7%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 49.0 5.28e-01 82.2% 95.0%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 51.0 5.40e-01 82.2% 93.8%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 4.58e-01 80.8% 72.9%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 45.0 5.05e-01 80.8% 98.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.83e-01 86.3% 85.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.88e-01 83.6% 81.9%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.76e-01 87.7% 80.3%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.64 39.0 3.81e-01 71.2% 54.9%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 4.72e-01 90.4% 80.6%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.62 47.0 4.96e-01 83.6% 92.1%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 40.0 4.40e-01 86.3% 89.1%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.61 43.0 3.42e-01 87.7% 35.8%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 44.0 4.11e-01 75.3% 95.5%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.60e-01 84.9% 81.1%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 42.0 4.53e-01 76.7% 88.5%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.59 44.0 3.83e-01 79.5% 64.0%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 39.0 3.90e-01 74.0% 67.1%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 38.0 4.19e-01 75.3% 85.7%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.37e-01 86.3% 92.7%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.58 41.0 4.25e-01 84.9% 81.8%
2vqeL00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 3.88e-01 89.0% 84.7%
1ha6A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 4.05e-01 74.0% 75.7%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 4.04e-01 78.1% 77.6%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 47.0 2.99e-01 97.3% 95.1%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 37.0 3.94e-01 75.3% 79.7%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.55 40.0 3.65e-01 83.6% 56.6%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 38.0 3.96e-01 76.7% 83.3%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 3.60e-01 90.4% 64.6%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 39.0 2.62e-01 82.2% 71.6%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 35.0 3.75e-01 82.2% 79.4%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 36.0 3.79e-01 79.5% 77.6%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 40.0 3.38e-01 89.0% 46.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.55e-01 82.2% 67.5%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 38.0 3.23e-01 78.1% 83.1%
1szzA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.53 41.0 3.21e-01 87.7% 80.7%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 36.0 3.17e-01 72.6% 76.1%
5v6fA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.52 40.0 3.37e-01 86.3% 99.3%
2gl5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 36.0 3.04e-01 72.6% 64.7%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 36.0 3.70e-01 79.5% 76.1%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 35.0 3.53e-01 76.7% 68.8%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.51 35.0 3.01e-01 74.0% 52.3%
1zh8A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 37.0 2.89e-01 79.5% 66.5%
4oseB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 36.0 2.50e-01 76.7% 70.1%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 33.0 3.47e-01 76.7% 73.1%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 36.0 3.11e-01 76.7% 68.0%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.50 35.0 3.77e-01 75.3% 91.5%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3991065 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.77 59.0 5.77e-01 82.2% 88.7%
4025829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 49.0 5.43e-01 87.7% 94.5%
4207556 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.71 55.0 5.60e-01 82.2% 97.1%
3264879 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 45.0 4.59e-01 82.2% 67.1%
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 47.0 5.16e-01 86.3% 90.9%
3995431 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 54.0 5.39e-01 82.2% 85.3%
4386715 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.69 52.0 4.97e-01 80.8% 87.1%
3764432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 45.0 4.73e-01 90.4% 76.9%
3886492 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.68 54.0 5.38e-01 94.5% 85.3%
3246255 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 49.0 5.02e-01 83.6% 80.0%
3921963 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.67 50.0 4.14e-01 80.8% 64.4%
4191690 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.67 40.0 4.38e-01 84.9% 74.1%
5026824 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.81e-01 86.3% 77.1%
3706786 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 45.0 4.46e-01 86.3% 66.7%
5022848 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 49.0 5.28e-01 90.4% 95.0%
4218142 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.66 43.0 3.90e-01 87.7% 48.0%
3584571 4.1.1.56 beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.66 45.0 3.15e-01 90.4% 21.7%
5043533 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 48.0 5.09e-01 86.3% 89.1%
3930846 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 43.0 4.39e-01 75.3% 70.0%
4093354 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 52.0 5.37e-01 86.3% 92.9%
3251896 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.65 49.0 4.21e-01 80.8% 65.2%
4084190 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.65 39.0 4.21e-01 84.9% 72.9%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 48.0 3.61e-01 87.7% 32.2%
4629735 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 48.0 5.02e-01 90.4% 89.2%
4300449 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.63 47.0 4.92e-01 90.4% 89.2%
3939881 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 42.0 4.19e-01 74.0% 66.7%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.62 43.0 4.47e-01 80.8% 80.0%
3933293 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 41.0 4.49e-01 72.6% 86.2%
3500084 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.73e-01 82.2% 91.4%
3197575 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.61 43.0 4.08e-01 75.3% 62.2%
3841524 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 46.0 4.05e-01 84.9% 54.5%
5019744 2.1.1.384 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30889 0.59 40.0 3.75e-01 72.6% 91.6%
4416106 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.58 46.0 3.89e-01 90.4% 80.6%
3811281 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 42.0 4.04e-01 76.7% 78.8%
4002892 109.4.1.2561 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FATC 0.58 41.0 2.41e-01 74.0% 10.3%
3486646 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 39.0 3.42e-01 100.0% 44.7%
5053225 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 43.0 3.93e-01 82.2% 63.0%
3443078 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.56 43.0 3.34e-01 86.3% 35.4%
4578663 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 37.0 3.76e-01 76.7% 70.0%
3584039 5.1.5.89 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.56 39.0 2.49e-01 74.0% 17.5%
3214162 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 42.0 4.59e-01 82.2% 100.0%
3855663 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 42.0 3.53e-01 83.6% 50.0%
3586562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.19e-01 91.8% 75.3%
3915693 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.55 39.0 4.06e-01 75.3% 84.6%
3386542 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.54 38.0 3.81e-01 74.0% 94.7%
3615163 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.90e-01 90.4% 66.4%
None 0.54 46.0 2.88e-01 98.6% 89.6%
3890480 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.53 38.0 3.78e-01 76.7% 73.3%
1700100 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.53 36.0 3.87e-01 76.7% 85.2%
3614397 10.13.1.1 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.53 40.0 3.20e-01 83.6% 95.6%
4982277 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 35.0 3.62e-01 71.2% 89.2%
3918073 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.51 36.0 3.70e-01 78.1% 78.6%
3422528 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 3.83e-01 76.7% 90.0%
3934544 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 37.0 2.51e-01 82.2% 28.0%
3287981 2.1.1.94 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.50 34.0 3.45e-01 71.2% 86.7%