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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00634
Bact-VirIg8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00634
Identity
- Kingdom:
- phage
Quality
83.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 33-85
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.78 | 66.0 | 6.47e-01 | 94.3% | 94.8% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 62.0 | 6.09e-01 | 88.7% | 93.1% |
| 4b7yD00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.77 | 62.0 | 5.05e-01 | 88.7% | 67.0% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.77 | 65.0 | 6.12e-01 | 94.3% | 87.5% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.76 | 66.0 | 5.65e-01 | 98.1% | 64.7% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 60.0 | 5.63e-01 | 86.8% | 100.0% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.75 | 57.0 | 4.15e-01 | 84.9% | 31.8% |
| 6z0fA02 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.74 | 57.0 | 4.08e-01 | 86.8% | 28.3% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.73 | 64.0 | 5.46e-01 | 98.1% | 64.7% |
| 1n1cA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.73 | 60.0 | 5.23e-01 | 100.0% | 59.8% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 59.0 | 5.81e-01 | 92.5% | 94.8% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.73 | 64.0 | 5.11e-01 | 100.0% | 67.9% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 59.0 | 5.54e-01 | 92.5% | 100.0% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.72 | 57.0 | 5.90e-01 | 96.2% | 95.9% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.72 | 59.0 | 5.12e-01 | 94.3% | 87.2% |
| 2rkkA01 | 1.25.40.270 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 | 0.71 | 56.0 | 4.07e-01 | 90.6% | 34.6% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.70 | 59.0 | 5.19e-01 | 94.3% | 74.4% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.69 | 56.0 | 4.82e-01 | 94.3% | 60.7% |
| 4gczA03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.69 | 59.0 | 5.61e-01 | 100.0% | 81.5% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.68 | 57.0 | 4.42e-01 | 94.3% | 44.0% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 56.0 | 5.45e-01 | 100.0% | 85.5% |
| 2r17C00 | 1.25.40.660 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein 35, helical subcomplex Vps35-C | 0.67 | 55.0 | 3.50e-01 | 98.1% | 21.1% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.67 | 51.0 | 4.27e-01 | 84.9% | 47.4% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.66 | 54.0 | 5.12e-01 | 96.2% | 81.5% |
| 2lt3A01 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.66 | 49.0 | 4.02e-01 | 90.6% | 43.0% |
| 3hl6A02 | 1.20.58.700 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 56.0 | 4.42e-01 | 98.1% | 52.2% |
| 1yq1A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 48.0 | 3.85e-01 | 81.1% | 40.2% |
| 3vkgA12 | 1.10.287.2610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 53.0 | 3.62e-01 | 100.0% | 65.6% |
| 4a18O00 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.64 | 49.0 | 3.68e-01 | 84.9% | 53.7% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.62 | 50.0 | 4.74e-01 | 96.2% | 89.6% |
| 3qf7A02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.62 | 52.0 | 5.04e-01 | 100.0% | 84.1% |
| 3k2nA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.61 | 44.0 | 3.15e-01 | 79.2% | 85.9% |
| 2v6eA01 | 1.10.287.3180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 49.0 | 4.45e-01 | 94.3% | 84.0% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.60 | 49.0 | 4.54e-01 | 100.0% | 70.3% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 44.0 | 4.19e-01 | 90.6% | 83.6% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 45.0 | 4.42e-01 | 100.0% | 85.5% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 45.0 | 4.31e-01 | 98.1% | 83.1% |
| 4bpxD00 | 1.20.930.80 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.54 | 43.0 | 3.06e-01 | 100.0% | 29.6% |
| 4iluA02 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.54 | 42.0 | 3.54e-01 | 98.1% | 74.8% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4600185 | 3602.1.1.15 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF444 | 0.80 | 70.0 | 6.20e-01 | 96.2% | 69.3% |
| 3580914 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.79 | 62.0 | 5.35e-01 | 86.8% | 56.5% |
| 3482349 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.79 | 64.0 | 5.96e-01 | 88.7% | 73.8% |
| 4527465 | 101.1.4.83 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Med10 | 0.78 | 67.0 | 5.09e-01 | 94.3% | 41.7% |
| 4385616 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.78 | 67.0 | 5.08e-01 | 94.3% | 42.5% |
| 3573699 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.77 | 62.0 | 5.84e-01 | 88.7% | 75.4% |
| 3689582 | 101.1.1.337 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GATA_AreA | 0.77 | 56.0 | 5.00e-01 | 81.1% | 54.7% |
| 3896686 | 192.8.1.36 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain | 0.77 | 65.0 | 5.25e-01 | 94.3% | 51.0% |
| 3545387 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.76 | 64.0 | 5.04e-01 | 94.3% | 48.2% |
| 3410365 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.76 | 66.0 | 3.88e-01 | 94.3% | 13.2% |
| 3872183 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.75 | 69.0 | 4.58e-01 | 100.0% | 29.2% |
| 3903553 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.75 | 68.0 | 5.20e-01 | 100.0% | 47.0% |
| 4034201 | 192.7.1.1 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB | 0.75 | 63.0 | 6.07e-01 | 94.3% | 85.0% |
| 3382794 | 304.9.1.7 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS | 0.74 | 66.0 | 4.06e-01 | 100.0% | 17.7% |
| 3786830 | 109.10.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin | 0.74 | 65.0 | 4.26e-01 | 98.1% | 29.5% |
| 4574972 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.74 | 61.0 | 5.91e-01 | 94.3% | 81.7% |
| 3880637 | 3755.3.1.465 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A | 0.74 | 63.0 | 4.60e-01 | 94.3% | 36.4% |
| 3470751 | 3755.3.1.297 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 | 0.74 | 66.0 | 4.67e-01 | 100.0% | 34.4% |
| 3753969 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.74 | 64.0 | 5.26e-01 | 100.0% | 74.0% |
| 5059578 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.74 | 66.0 | 5.08e-01 | 100.0% | 93.0% |
| 3705683 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.74 | 63.0 | 5.20e-01 | 100.0% | 54.0% |
| 3607086 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.74 | 65.0 | 5.66e-01 | 100.0% | 85.0% |
| 3874984 | 192.8.1.248 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › KIF21A_4th | 0.73 | 65.0 | 3.94e-01 | 100.0% | 16.4% |
| 4027007 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.73 | 54.0 | 3.89e-01 | 81.1% | 31.6% |
| 4142309 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.73 | 63.0 | 4.50e-01 | 100.0% | 40.6% |
| 3888162 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.72 | 62.0 | 4.80e-01 | 98.1% | 55.0% |
| 3761838 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.72 | 62.0 | 4.85e-01 | 98.1% | 52.2% |
| 3608012 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.72 | 64.0 | 5.45e-01 | 100.0% | 64.7% |
| 3175197 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.72 | 60.0 | 4.52e-01 | 94.3% | 39.2% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.72 | 63.0 | 5.21e-01 | 100.0% | 57.9% |
| 3581757 | 11.12.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb | 0.71 | 56.0 | 3.72e-01 | 88.7% | 21.8% |
| 4440290 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.71 | 61.0 | 5.51e-01 | 100.0% | 74.7% |
| 3305069 | 605.1.1.92 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Myb_CC_LHEQLE | 0.71 | 58.0 | 5.36e-01 | 92.5% | 72.9% |
| 3915878 | 3922.1.1.65 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PLC-beta_C | 0.70 | 59.0 | 3.86e-01 | 94.3% | 23.4% |
| 4965518 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.70 | 59.0 | 4.84e-01 | 100.0% | 50.5% |
| 4682722 | 237.1.1.5 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RolB_RolC | 0.69 | 57.0 | 3.86e-01 | 92.5% | 33.0% |
| 3704373 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.69 | 58.0 | 4.57e-01 | 100.0% | 45.0% |
| 5026453 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.68 | 59.0 | 4.36e-01 | 100.0% | 39.3% |
| 4039238 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.67 | 52.0 | 5.23e-01 | 98.1% | 89.1% |
| 5048239 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.67 | 55.0 | 4.42e-01 | 100.0% | 45.2% |
| 3588414 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.67 | 58.0 | 3.34e-01 | 100.0% | 27.5% |
| 3614039 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.66 | 52.0 | 2.97e-01 | 90.6% | 11.6% |
| 3456370 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.64 | 51.0 | 3.79e-01 | 94.3% | 58.1% |