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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00699

Bact-Vir

Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00699

Identity

Kingdom:
phage

Quality

85.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-138
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.77 41.0 4.97e-01 83.5% 81.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 42.0 5.41e-01 75.3% 100.0%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.74 45.0 4.94e-01 83.5% 75.4%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 41.0 5.17e-01 82.4% 94.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.73 46.0 5.05e-01 83.5% 80.6%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 41.0 4.82e-01 82.4% 81.4%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 37.0 4.81e-01 70.6% 89.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 40.0 4.34e-01 82.4% 67.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 45.0 5.25e-01 87.1% 98.3%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 44.0 5.11e-01 87.1% 96.7%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 42.0 5.07e-01 83.5% 100.0%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 43.0 4.50e-01 83.5% 72.2%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 41.0 4.83e-01 83.5% 96.5%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.42e-01 87.1% 70.2%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 43.0 3.89e-01 87.1% 50.4%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 45.0 5.05e-01 95.3% 98.4%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.19e-01 82.4% 69.1%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.61 47.0 3.65e-01 83.5% 73.9%
1ia9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 48.0 3.99e-01 84.7% 93.1%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.60 41.0 3.97e-01 83.5% 62.9%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 37.0 4.30e-01 87.1% 98.2%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.58 47.0 3.78e-01 90.6% 94.9%
2vcyA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.56 42.0 3.32e-01 80.0% 56.1%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.55 43.0 3.83e-01 83.5% 78.7%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.54 45.0 3.83e-01 90.6% 64.0%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 43.0 3.21e-01 87.1% 34.6%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 42.0 3.30e-01 91.8% 42.7%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3363448 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.72 50.0 5.07e-01 83.5% 71.8%
5012053 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.72 51.0 5.51e-01 83.5% 85.1%
4278184 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.68 46.0 4.81e-01 82.4% 75.0%
3479037 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.61e-01 83.5% 71.2%
3843554 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 44.0 4.84e-01 83.5% 81.4%
2725406 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 44.0 4.54e-01 83.5% 69.5%
3765126 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 43.0 5.14e-01 83.5% 100.0%
3294025 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 43.0 5.14e-01 72.9% 100.0%
3541996 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.67 43.0 3.26e-01 83.5% 28.9%
3550579 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 43.0 5.10e-01 87.1% 100.0%
3469800 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 43.0 4.47e-01 82.4% 70.0%
3222210 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 43.0 4.69e-01 87.1% 80.0%
4929472 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.63e-01 82.4% 73.8%
4961138 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 42.0 4.51e-01 83.5% 73.3%
2890675 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 43.0 4.82e-01 87.1% 87.5%
3514867 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 42.0 4.49e-01 83.5% 74.7%
3240651 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 47.0 4.88e-01 100.0% 81.2%
3332609 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.65 47.0 4.07e-01 75.3% 55.2%
4220126 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 43.0 4.34e-01 83.5% 68.2%
3207081 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 44.0 5.00e-01 80.0% 93.8%
3482646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 45.0 3.41e-01 87.1% 31.5%
4941299 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.64 40.0 4.04e-01 76.5% 63.5%
4555816 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 42.0 4.27e-01 83.5% 68.2%
3578855 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 42.0 4.38e-01 84.7% 72.5%
3425872 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.63 48.0 4.70e-01 80.0% 80.0%
3300226 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.62 50.0 5.14e-01 83.5% 91.3%
5074039 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 41.0 4.39e-01 83.5% 77.3%
None 0.62 49.0 3.07e-01 82.4% 18.3%
4622062 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 56.0 4.07e-01 100.0% 49.8%
3368864 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 42.0 4.70e-01 85.9% 90.8%
3816455 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.62 49.0 4.27e-01 83.5% 58.4%
4581369 4.1.1.166 beta barrels › SH3 › SH3 › SH3 › DUF2314 0.62 50.0 4.62e-01 85.9% 72.4%
3302391 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.62 49.0 4.06e-01 83.5% 52.1%
3668420 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.61 48.0 3.64e-01 82.4% 40.0%
3693741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.90e-01 87.1% 94.2%
3230400 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.87e-01 87.1% 96.9%
4655719 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 43.0 4.29e-01 83.5% 70.0%
3576443 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 44.0 4.76e-01 83.5% 91.4%
3669214 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.61 48.0 4.15e-01 83.5% 56.9%
3587555 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.65e-01 83.5% 88.6%
3890362 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.53e-01 72.9% 85.7%
5067227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.19e-01 87.1% 72.3%
3934655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.74e-01 83.5% 98.8%
3629316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 39.0 3.72e-01 83.5% 56.0%
3607981 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.57e-01 89.4% 86.5%
3795384 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 38.0 2.85e-01 83.5% 26.5%
3357709 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 43.0 4.32e-01 82.4% 77.6%
3834112 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 45.0 4.64e-01 82.4% 92.5%
3700578 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.58 32.0 3.66e-01 71.8% 75.0%
5063003 4.1.1.120 beta barrels › SH3 › SH3 › SH3 › SH3_16 0.57 43.0 4.67e-01 80.0% 95.7%
3592075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.53e-01 83.5% 83.5%
3342814 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.57 44.0 4.31e-01 83.5% 78.9%
3789647 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 44.0 3.59e-01 90.6% 45.8%
3356605 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 43.0 4.28e-01 82.4% 81.1%
3808601 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.33e-01 83.5% 90.6%
4398865 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 43.0 4.15e-01 83.5% 84.2%
3514522 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.55 41.0 4.40e-01 82.4% 90.7%
4001388 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 42.0 2.96e-01 85.9% 41.0%
3459303 3270.1.1.0 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.54 40.0 3.87e-01 80.0% 86.0%
3878369 206.1.1.13 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.54 39.0 2.89e-01 80.0% 53.5%
3489469 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 43.0 4.02e-01 87.1% 81.0%
3443821 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.53 36.0 3.21e-01 70.6% 52.5%
D2 medium residues 1-50
PDB
Domain cluster: representative