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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00702

Bact-Vir

Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00702

Identity

Kingdom:
phage

Quality

83.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-63
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 45.0 3.19e-01 77.8% 38.0%
1zs8A01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.59 48.0 3.51e-01 88.9% 48.0%
1xeaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 43.0 3.10e-01 79.4% 36.5%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 42.0 3.29e-01 77.8% 52.5%
3pqhA01 2.20.220.20 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › 0.57 41.0 4.17e-01 77.8% 93.3%
1zhxA03 2.40.160.120 Mainly Beta › Beta Barrel › Porin › 0.57 39.0 2.85e-01 73.0% 62.8%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 3.14e-01 77.8% 51.8%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.55 39.0 3.38e-01 77.8% 80.7%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 42.0 2.73e-01 90.5% 78.7%
6p2lA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 39.0 2.64e-01 85.7% 52.4%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.51 38.0 3.01e-01 81.0% 82.7%
6dxwA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.51 34.0 2.43e-01 71.4% 45.4%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 37.0 2.94e-01 84.1% 96.9%
4pbpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 2.89e-01 88.9% 57.3%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 38.0 2.50e-01 84.1% 59.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3217918 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.67 53.0 3.34e-01 88.9% 54.6%
3273142 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.65 58.0 3.69e-01 100.0% 36.5%
3703666 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.64 47.0 3.47e-01 79.4% 67.6%
4951953 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.61 44.0 3.10e-01 76.2% 37.9%
184285 298.1.1.20 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › YceM-like_C 0.61 45.0 3.44e-01 77.8% 50.0%
3254674 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.58 48.0 3.09e-01 100.0% 55.9%
3915890 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.58 41.0 3.48e-01 76.2% 64.5%
1514608 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.58 41.0 2.89e-01 76.2% 45.7%
4939145 10.1.1.64 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF2341 0.57 41.0 2.99e-01 81.0% 40.5%
3584379 3091.1.1.1 ↗ a+b complex topology › Myosin VI cargo binding domain › Myosin VI cargo binding domain › Myosin VI cargo binding domain › Myosin-VI_CBD 0.56 38.0 3.21e-01 71.4% 59.1%
2832395 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.54 41.0 2.87e-01 81.0% 33.0%
3231485 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 38.0 2.92e-01 76.2% 38.7%
3798981 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 43.0 2.68e-01 90.5% 80.8%
None — 0.53 43.0 2.81e-01 100.0% 48.1%
3707066 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.53 38.0 2.62e-01 76.2% 70.7%
4942586 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 36.0 2.98e-01 71.4% 58.2%
4355722 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.52 38.0 3.33e-01 77.8% 68.4%
3788029 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.52 36.0 2.45e-01 73.0% 50.0%
3420355 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 41.0 2.86e-01 93.7% 87.2%
3968445 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 36.0 2.79e-01 74.6% 73.8%