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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00748

Bact-Vir

Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00748

Identity

Kingdom:
phage

Quality

70.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-80
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 42.0 3.78e-01 90.1% 45.8%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 43.0 3.76e-01 90.1% 44.7%
2np2A00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.66 37.0 3.27e-01 95.8% 39.2%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 43.0 3.76e-01 90.1% 44.0%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.64 54.0 4.29e-01 97.2% 57.8%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 42.0 3.65e-01 87.3% 44.0%
4a2bA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 51.0 4.59e-01 97.2% 64.2%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 42.0 3.63e-01 90.1% 44.0%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 38.0 3.47e-01 90.1% 44.4%
1ki1B02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 39.0 3.06e-01 90.1% 32.4%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 3.76e-01 90.1% 49.1%
1k25B02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 50.0 3.42e-01 98.6% 72.8%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 44.0 3.51e-01 78.9% 41.1%
3dmlA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 45.0 4.12e-01 81.7% 100.0%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 40.0 3.57e-01 87.3% 49.0%
6fexA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 3.70e-01 73.2% 87.9%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 46.0 3.94e-01 90.1% 56.6%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.58 45.0 3.57e-01 98.6% 42.1%
3op2A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 46.0 3.83e-01 91.5% 54.5%
3vfcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 44.0 3.59e-01 91.5% 44.3%
3vpyA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 42.0 3.46e-01 85.9% 57.9%
3pgbA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.51e-01 78.9% 53.4%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 43.0 4.23e-01 85.9% 88.2%
5troA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 43.0 2.86e-01 87.3% 24.5%
2lktA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 47.0 3.96e-01 97.2% 84.8%
1chmA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.55 37.0 2.60e-01 70.4% 95.5%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 44.0 3.91e-01 91.5% 62.6%
3a3jA02 2.60.410.10 Mainly Beta › Sandwich › Peptidoglycan synthesis regulatory factor (PBP3), Domain 2 › D-Ala-D-Ala carboxypeptidase, C-terminal domain 0.55 37.0 3.39e-01 70.4% 78.3%
2ikkA00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.55 37.0 2.94e-01 71.8% 87.7%
3up1B01 2.60.40.1870 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 37.0 3.38e-01 70.4% 72.0%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 41.0 3.62e-01 93.0% 55.8%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 34.0 3.47e-01 78.9% 65.7%
1r26A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 45.0 3.88e-01 93.0% 92.0%
4j56E00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 42.0 3.73e-01 85.9% 99.0%
3wodG00 2.30.30.1250 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.16e-01 73.2% 40.9%
5yjlC02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.53 48.0 4.11e-01 100.0% 79.3%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 43.0 3.86e-01 91.5% 80.8%
2gqwA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 40.0 3.74e-01 81.7% 76.4%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.53 42.0 3.25e-01 90.1% 78.5%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.66e-01 85.9% 81.6%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.52 36.0 3.61e-01 87.3% 71.8%
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.90e-01 85.9% 74.1%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.52 41.0 3.40e-01 88.7% 82.4%
2l6cA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 41.0 3.64e-01 87.3% 98.1%
2g7zA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.51 41.0 3.48e-01 90.1% 52.5%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 42.0 3.54e-01 97.2% 92.0%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.51 43.0 3.94e-01 97.2% 85.4%
2diyA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 43.0 3.77e-01 98.6% 97.3%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4341865 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.73 49.0 5.49e-01 90.1% 90.9%
3228944 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 44.0 3.81e-01 88.7% 41.8%
3789602 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 45.0 3.69e-01 90.1% 37.6%
4564186 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 49.0 4.04e-01 90.1% 42.4%
3806797 220.1.1.171 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7135 0.68 41.0 3.03e-01 90.1% 26.1%
4050317 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 47.0 3.90e-01 90.1% 41.6%
3269253 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 45.0 3.82e-01 90.1% 43.5%
3389062 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 46.0 4.02e-01 90.1% 52.4%
5046300 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 45.0 4.24e-01 76.1% 81.2%
3962258 206.1.3.27 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CP_ATPgrasp_2 0.62 43.0 3.44e-01 73.2% 44.0%
3705941 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 52.0 5.01e-01 93.0% 95.0%
3494145 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 43.0 3.67e-01 90.1% 45.2%
3558010 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 43.0 3.64e-01 90.1% 44.2%
3743221 2484.1.1.114 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.61 53.0 3.52e-01 95.8% 86.9%
3295998 12.3.1.21 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hyd_65N_2 0.61 51.0 3.48e-01 100.0% 36.0%
3281007 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 3.62e-01 90.1% 38.7%
3974914 7089.1.1.4 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › FlgI 0.60 48.0 4.16e-01 90.1% 60.0%
3782121 3435.1.1.2 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-N 0.59 50.0 3.99e-01 98.6% 66.7%
3456246 330.1.1.19 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.59 49.0 4.53e-01 91.5% 81.1%
3271265 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 46.0 3.87e-01 90.1% 50.8%
4612008 2485.1.1.6 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP 0.58 45.0 3.97e-01 84.5% 86.7%
4015830 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 48.0 2.88e-01 100.0% 13.5%
3479860 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 46.0 2.81e-01 90.1% 19.4%
5005630 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.57 46.0 4.18e-01 91.5% 68.0%
3250819 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.57 45.0 3.57e-01 90.1% 42.1%
3481288 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 46.0 4.01e-01 91.5% 66.1%
5055109 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.57 49.0 4.63e-01 100.0% 96.7%
4939419 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.57 49.0 4.66e-01 98.6% 98.8%
4463772 2484.1.1.36 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.56 42.0 2.93e-01 83.1% 26.8%
3753952 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.56 48.0 3.98e-01 94.4% 56.0%
3481519 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.56 38.0 2.77e-01 71.8% 44.2%
3641061 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.56 46.0 3.70e-01 97.2% 50.6%
3458732 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.55 38.0 4.06e-01 71.8% 90.0%
5859 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.55 47.0 4.39e-01 100.0% 92.5%
5048021 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.54 36.0 2.56e-01 71.8% 20.0%
4373611 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.54 47.0 3.61e-01 100.0% 85.7%
3736612 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 44.0 4.25e-01 93.0% 87.1%
3182444 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 41.0 2.71e-01 81.7% 37.7%
3469386 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.54 38.0 2.80e-01 74.6% 69.3%
5049920 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.54 47.0 3.70e-01 100.0% 76.2%
4214812 4.8.1.26 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › bPH_8 0.54 42.0 3.93e-01 90.1% 67.0%
4314504 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 45.0 3.72e-01 95.8% 74.1%
3599323 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.53 44.0 4.12e-01 93.0% 91.1%
3683970 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.51 45.0 3.52e-01 95.8% 68.3%
3771653 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 42.0 3.78e-01 93.0% 65.7%
4082096 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.51 43.0 3.46e-01 93.0% 69.3%
4978408 247.1.1.12 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 0.51 34.0 2.49e-01 70.4% 21.9%
3593508 3333.1.1.0 a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 0.51 35.0 2.88e-01 73.2% 49.7%
3865654 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.51 36.0 3.15e-01 77.5% 51.7%