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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00760
Bact-VirIg8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00760
Identity
- Kingdom:
- phage
Quality
89.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 254-309
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3w8hB00 | 1.10.12.70 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › | 0.62 | 43.0 | 4.19e-01 | 75.0% | 89.4% |
| 3tbiB02 | 6.10.140.1670 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 41.0 | 3.53e-01 | 73.2% | 42.0% |
| 2pbpA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.56 | 42.0 | 2.88e-01 | 80.4% | 53.8% |
| 3bg3A04 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 39.0 | 4.10e-01 | 82.1% | 95.7% |
| 4qiwA04 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.53 | 37.0 | 2.75e-01 | 78.6% | 89.6% |
D2
medium
residues 25-124
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jugA01 | 1.10.10.1830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain | 0.62 | 35.0 | 4.42e-01 | 83.0% | 100.0% |
| 2looA02 | 1.10.10.1740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like | 0.58 | 40.0 | 4.48e-01 | 86.0% | 94.7% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.55 | 40.0 | 4.32e-01 | 92.0% | 92.8% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.55 | 39.0 | 4.15e-01 | 81.0% | 85.4% |
| 6ghfB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 38.0 | 3.62e-01 | 76.0% | 71.0% |
| 3ea5D00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.52 | 44.0 | 2.61e-01 | 95.0% | 19.1% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.52 | 39.0 | 3.42e-01 | 81.0% | 51.3% |
| 4dloB02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 38.0 | 3.65e-01 | 77.0% | 66.7% |
| 1lqsL01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 35.0 | 3.54e-01 | 70.0% | 89.0% |
| 2d6yA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 40.0 | 3.31e-01 | 85.0% | 65.6% |
| 3onkA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 44.0 | 3.98e-01 | 97.0% | 97.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3167910 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.59 | 49.0 | 2.94e-01 | 91.0% | 58.8% |
| 3842745 | 109.4.1.673 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fanconi_A_N | 0.58 | 44.0 | 3.37e-01 | 79.0% | 48.0% |
| 3437890 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 40.0 | 4.20e-01 | 83.0% | 80.7% |
| 4228031 | 109.4.1.128 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like_2 | 0.58 | 43.0 | 3.08e-01 | 78.0% | 58.3% |
| 3930630 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.55 | 38.0 | 2.80e-01 | 70.0% | 75.5% |
| 3802814 | 2488.1.1.18 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › DTW | 0.55 | 43.0 | 3.09e-01 | 86.0% | 37.4% |
| 3781434 | 109.4.1.46 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N | 0.53 | 42.0 | 2.93e-01 | 85.0% | 54.6% |
| 3408895 | 3382.1.1.1 ↗ | alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt | 0.53 | 44.0 | 3.41e-01 | 91.0% | 73.0% |
| 3582083 | 109.4.1.1808 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd3, PF30235 | 0.53 | 46.0 | 2.69e-01 | 98.0% | 18.4% |
| 3231568 | 7515.1.1.19 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase, Phosphodiest | 0.53 | 42.0 | 2.90e-01 | 86.0% | 79.4% |
| 4019103 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 42.0 | 3.18e-01 | 87.0% | 74.2% |
| 3605561 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.52 | 38.0 | 3.21e-01 | 76.0% | 80.6% |
| 3612971 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 39.0 | 3.31e-01 | 80.0% | 52.1% |
| 3817784 | 109.4.1.553 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1 | 0.50 | 42.0 | 2.97e-01 | 94.0% | 56.2% |
| 3167849 | 109.4.1.501 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UME | 0.50 | 43.0 | 2.83e-01 | 100.0% | 48.2% |
| 5028878 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.50 | 39.0 | 3.33e-01 | 87.0% | 97.2% |
D3
medium
residues 125-252
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4esjA01 | 3.40.210.30 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › Dam replacing family, catalytic PD-(D/E)XK domain | 0.66 | 46.0 | 4.34e-01 | 96.9% | 59.0% |
| 3ndhA00 | 3.40.600.30 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › | 0.62 | 50.0 | 4.19e-01 | 100.0% | 51.4% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.59 | 32.0 | 4.12e-01 | 96.9% | 98.5% |
| 3h5kA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.57 | 37.0 | 3.30e-01 | 98.4% | 46.3% |
| 3e5nA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 33.0 | 3.35e-01 | 96.1% | 57.6% |
| 1iftA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.56 | 36.0 | 3.27e-01 | 96.9% | 47.7% |
| 3tqtB01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 32.0 | 3.35e-01 | 97.7% | 61.3% |
| 3mvgA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.55 | 35.0 | 3.21e-01 | 96.9% | 49.1% |
| 6mzoA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 31.0 | 3.19e-01 | 99.2% | 59.5% |
| 2gk4A00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.51 | 36.0 | 3.00e-01 | 71.9% | 60.3% |
| 2l3tA02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 27.0 | 3.01e-01 | 97.7% | 62.0% |
| 4ls9B02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.50 | 31.0 | 3.21e-01 | 98.4% | 65.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4138642 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 30.0 | 2.92e-01 | 98.4% | 39.3% |
| 5080723 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 47.0 | 4.47e-01 | 95.3% | 64.5% |
| 3927599 | 2007.1.13.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase | 0.62 | 30.0 | 2.91e-01 | 99.2% | 40.0% |
| 1145719 | 2008.1.1.62 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ThaI | 0.61 | 49.0 | 4.19e-01 | 100.0% | 52.6% |
| 3865632 | 2004.1.1.78 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rap_GAP | 0.60 | 33.0 | 2.80e-01 | 98.4% | 33.2% |
| 4930787 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.59 | 34.0 | 3.61e-01 | 93.0% | 63.6% |
| 152630 | 2003.1.10.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N | 0.56 | 32.0 | 3.17e-01 | 96.1% | 51.9% |
| 3937222 | 243.1.1.50 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind | 0.54 | 42.0 | 3.69e-01 | 81.2% | 96.3% |
| 4956984 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.52 | 30.0 | 3.38e-01 | 98.4% | 71.4% |
| 5026883 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.51 | 29.0 | 3.34e-01 | 98.4% | 75.5% |
| 2557291 | 7575.1.1.4 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 | 0.51 | 39.0 | 2.91e-01 | 81.2% | 68.0% |
| 3639211 | 243.1.1.50 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind | 0.51 | 39.0 | 3.42e-01 | 82.0% | 82.3% |