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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00789

Bact-Vir

Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00789

Identity

Kingdom:
phage

Quality

93.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-78
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.80 55.0 5.36e-01 88.9% 66.2%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.77 52.0 5.62e-01 88.9% 83.3%
4epcA01 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 5.69e-01 83.3% 82.7%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 57.0 6.25e-01 84.7% 98.3%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.75 51.0 5.60e-01 84.7% 87.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 59.0 6.29e-01 84.7% 95.3%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 59.0 6.14e-01 84.7% 92.4%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 55.0 6.10e-01 83.3% 100.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 55.0 5.51e-01 88.9% 85.1%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 57.0 5.92e-01 91.7% 97.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.67 52.0 4.10e-01 84.7% 51.0%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 35.0 3.59e-01 73.6% 53.5%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 37.0 3.62e-01 76.4% 50.0%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 54.0 4.27e-01 93.1% 63.7%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 53.0 3.66e-01 90.3% 40.2%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 35.0 3.74e-01 75.0% 63.5%
4js8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 45.0 4.16e-01 76.4% 93.3%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 4.04e-01 75.0% 59.3%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 43.0 3.66e-01 76.4% 78.9%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.75e-01 94.4% 87.7%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 46.0 3.74e-01 86.1% 69.5%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 46.0 3.94e-01 87.5% 66.9%
1u2kA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.58 45.0 3.84e-01 87.5% 65.6%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.58 46.0 2.99e-01 86.1% 26.3%
2nn6F00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.57 47.0 3.39e-01 93.1% 88.3%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 44.0 4.03e-01 84.7% 83.3%
6k3lB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 42.0 3.91e-01 80.6% 80.2%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 44.0 4.06e-01 86.1% 81.9%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.65e-01 84.7% 63.0%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 40.0 2.60e-01 77.8% 19.5%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.55 44.0 3.77e-01 86.1% 77.0%
3uqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 41.0 3.82e-01 81.9% 86.0%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 44.0 3.61e-01 91.7% 70.9%
6ro0B02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.58e-01 81.9% 97.3%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.54 38.0 2.90e-01 75.0% 37.0%
3sxxC01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.53e-01 77.8% 65.7%
4euuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 43.0 4.02e-01 87.5% 89.9%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 41.0 3.50e-01 84.7% 98.4%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 41.0 3.16e-01 84.7% 39.9%
2rkuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 3.68e-01 79.2% 85.4%
6i4pA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 3.43e-01 84.7% 98.4%
5w36B01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.52 35.0 3.00e-01 72.2% 62.7%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.32e-01 87.5% 57.6%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 43.0 2.79e-01 90.3% 25.8%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 35.0 3.66e-01 73.6% 77.6%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.44e-01 98.6% 82.0%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 37.0 2.46e-01 77.8% 25.9%
3a7fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 37.0 3.49e-01 79.2% 89.2%
2xzsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 38.0 3.58e-01 83.3% 83.5%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3568329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 57.0 6.22e-01 84.7% 88.3%
3790784 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.80 46.0 3.02e-01 76.4% 15.5%
4931822 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 52.0 5.42e-01 84.7% 73.8%
3396897 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.79 62.0 6.57e-01 84.7% 93.7%
3256432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 56.0 6.06e-01 88.9% 88.3%
4501723 4.8.1.45 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.77 52.0 5.83e-01 81.9% 90.9%
3507146 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 55.0 5.17e-01 88.9% 62.4%
4213326 4.1.1.86 beta barrels › SH3 › SH3 › SH3 › GW 0.77 60.0 5.79e-01 83.3% 83.7%
4063512 4.1.1.86 beta barrels › SH3 › SH3 › SH3 › GW 0.76 59.0 5.84e-01 81.9% 89.3%
4049824 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 54.0 4.60e-01 88.9% 47.0%
3975862 220.1.1.104 beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.75 44.0 4.31e-01 77.8% 53.8%
3581631 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 62.0 6.56e-01 88.9% 98.5%
4605602 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 57.0 5.96e-01 88.9% 89.2%
3482680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 60.0 6.34e-01 88.9% 95.4%
4138935 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.74 57.0 5.69e-01 83.3% 89.3%
3514345 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 59.0 6.23e-01 86.1% 100.0%
4029199 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 58.0 3.21e-01 84.7% 7.7%
4863266 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.72 49.0 5.12e-01 84.7% 76.9%
3623785 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 57.0 5.70e-01 84.7% 81.3%
4928794 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 44.0 5.34e-01 73.6% 100.0%
4026274 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 55.0 4.37e-01 90.3% 42.1%
3957249 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 45.0 5.04e-01 80.6% 83.6%
4376886 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.71 58.0 5.63e-01 88.9% 87.5%
4261760 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.70 54.0 4.92e-01 81.9% 72.6%
4000858 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 60.0 6.07e-01 97.2% 94.3%
3787441 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 63.0 5.87e-01 100.0% 81.1%
3510024 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.70 55.0 4.75e-01 84.7% 77.3%
3707023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 54.0 4.86e-01 84.7% 78.0%
3670066 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.67 56.0 4.33e-01 90.3% 58.7%
None 0.67 55.0 4.11e-01 88.9% 67.6%
3887433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.25e-01 83.3% 97.4%
3503332 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 48.0 5.01e-01 81.9% 98.5%
4932514 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.64 50.0 4.23e-01 84.7% 60.8%
3411446 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 48.0 3.03e-01 79.2% 26.1%
3461775 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 52.0 5.19e-01 90.3% 96.0%
3530891 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 49.0 4.27e-01 84.7% 57.8%
3870945 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 56.0 4.02e-01 100.0% 90.5%
3390463 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.62 41.0 4.27e-01 79.2% 75.4%
3773541 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 46.0 2.94e-01 79.2% 24.0%
3933549 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 47.0 2.97e-01 81.9% 23.6%
3558025 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 46.0 2.92e-01 79.2% 23.6%
3550047 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.61 55.0 4.18e-01 100.0% 91.8%
3268856 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 47.0 3.05e-01 81.9% 24.6%
3773104 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 46.0 3.89e-01 84.7% 63.7%
3907176 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.61 49.0 4.59e-01 88.9% 72.2%
3935325 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 47.0 2.99e-01 81.9% 26.2%
3939715 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 46.0 3.00e-01 81.9% 25.6%
3238955 4.1.1.377 beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.60 50.0 4.84e-01 97.2% 82.5%
3582034 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.60 48.0 3.06e-01 86.1% 23.8%
4002526 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 48.0 3.05e-01 86.1% 23.6%
3575262 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.59 45.0 2.90e-01 81.9% 32.5%
3931577 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 45.0 3.00e-01 81.9% 29.3%
3277727 4.8.1.43 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.58 39.0 3.64e-01 76.4% 53.7%
461497 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 46.0 3.52e-01 86.1% 49.1%
2697431 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.58 45.0 3.98e-01 86.1% 79.6%
None 0.57 45.0 3.58e-01 86.1% 58.0%
3781787 222.1.1.27 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.57 39.0 3.44e-01 72.2% 98.2%
3211944 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.57 47.0 3.01e-01 91.7% 95.7%
3777737 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 3.95e-01 91.7% 81.7%
3810482 1.1.7.46 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.56 38.0 3.13e-01 70.8% 42.2%
4531826 2003.1.3.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.56 45.0 3.03e-01 91.7% 66.1%
3670468 4.1.1.332 beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.56 43.0 3.60e-01 84.7% 53.8%
3236265 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 47.0 3.02e-01 91.7% 98.4%
4014180 708.1.2.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.56 40.0 3.49e-01 79.2% 89.2%
4949552 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 37.0 3.78e-01 70.8% 80.0%
3631383 2003.1.2.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.54 42.0 3.32e-01 86.1% 95.0%
4991059 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 35.0 4.05e-01 73.6% 98.0%
3796176 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.53 44.0 3.58e-01 95.8% 55.3%
3285829 4.1.1.425 beta barrels › SH3 › SH3 › SH3 › RNHCP 0.53 38.0 3.45e-01 81.9% 53.3%
3504203 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 42.0 2.80e-01 86.1% 26.2%
4035868 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.53 43.0 3.70e-01 95.8% 93.8%
4491369 2003.1.3.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.51 41.0 2.88e-01 95.8% 79.3%
4970357 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.51 42.0 2.54e-01 100.0% 32.0%
None 0.51 35.0 2.44e-01 70.8% 68.5%
5011794 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 39.0 3.10e-01 86.1% 91.9%