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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00836
Bact-VirIg8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00836
Identity
- Kingdom:
- phage
Quality
92.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-111
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00182__D12-123
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.64 | 45.0 | 4.25e-01 | 100.0% | 59.8% |
| 5yhoA02 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.60 | 46.0 | 4.35e-01 | 100.0% | 66.7% |
| 2ztbA03 | 2.60.40.3040 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 23.0 | 3.38e-01 | 76.5% | 87.5% |
| 4b6mB00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.52 | 35.0 | 3.92e-01 | 100.0% | 89.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5029166 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 43.0 | 4.96e-01 | 100.0% | 89.2% |
| 3798523 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.66 | 47.0 | 5.18e-01 | 100.0% | 93.8% |
| 3196173 | 3333.1.1.0 ↗ | a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 | 0.51 | 39.0 | 3.44e-01 | 90.2% | 54.7% |
| 3920039 | 4111.1.1.3 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › DUF1907 | 0.51 | 40.0 | 3.56e-01 | 100.0% | 57.7% |
| 5020256 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.51 | 31.0 | 3.78e-01 | 87.3% | 96.9% |
D2
high
residues 116-209
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.75 | 36.0 | 3.96e-01 | 98.9% | 55.1% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 39.0 | 4.96e-01 | 100.0% | 87.7% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.67 | 48.0 | 4.38e-01 | 100.0% | 57.3% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.66 | 50.0 | 4.99e-01 | 100.0% | 78.9% |
| 1zymA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.65 | 56.0 | 5.14e-01 | 96.8% | 83.3% |
| 4ys0A02 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.63 | 46.0 | 3.85e-01 | 78.7% | 95.9% |
| 2rkkA01 | 1.25.40.270 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 | 0.59 | 43.0 | 3.71e-01 | 77.7% | 82.1% |
| 2khvA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.59 | 48.0 | 5.00e-01 | 92.6% | 100.0% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.59 | 49.0 | 4.61e-01 | 91.5% | 86.7% |
| 6ui4A03 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 33.0 | 3.44e-01 | 92.6% | 59.3% |
| 2d2sA01 | 1.20.58.1210 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain | 0.58 | 41.0 | 3.83e-01 | 72.3% | 60.3% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.56 | 46.0 | 4.04e-01 | 97.9% | 59.6% |
| 5xdcB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.56 | 40.0 | 3.79e-01 | 77.7% | 63.1% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.56 | 47.0 | 4.84e-01 | 94.7% | 100.0% |
| 2wwxB00 | 1.20.1260.70 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.56 | 48.0 | 3.83e-01 | 97.9% | 52.0% |
| 6t4hA03 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.55 | 42.0 | 3.47e-01 | 80.9% | 97.1% |
| 3mpiA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 38.0 | 3.56e-01 | 74.5% | 59.5% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.54 | 42.0 | 3.56e-01 | 100.0% | 50.6% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.53 | 47.0 | 4.03e-01 | 97.9% | 98.1% |
| 4btfA01 | 1.20.930.20 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain | 0.53 | 41.0 | 4.03e-01 | 81.9% | 86.0% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.53 | 47.0 | 4.36e-01 | 98.9% | 91.0% |
| 4dk4B00 | 1.10.4010.10 | Mainly Alpha › Orthogonal Bundle › all-alpha NTP pyrophosphatase fold › Type II deoxyuridine triphosphatase | 0.53 | 43.0 | 3.42e-01 | 93.6% | 100.0% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 37.0 | 3.62e-01 | 78.7% | 68.0% |
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 40.0 | 3.69e-01 | 100.0% | 62.6% |
| 4pxoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 37.0 | 3.37e-01 | 75.5% | 99.2% |
| 3o10C00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.51 | 40.0 | 3.59e-01 | 85.1% | 73.5% |
| 1jvmB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 38.0 | 3.81e-01 | 97.9% | 76.0% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 43.0 | 4.26e-01 | 93.6% | 95.0% |
| 6d5xA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.51 | 44.0 | 3.76e-01 | 94.7% | 67.5% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.51 | 36.0 | 3.93e-01 | 100.0% | 94.6% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 34.0 | 3.43e-01 | 83.0% | 68.1% |
| 6mgiA03 | 1.20.1440.90 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Phosphoenolpyruvate/pyruvate domain | 0.50 | 42.0 | 3.77e-01 | 93.6% | 97.8% |
| 5cofA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.50 | 41.0 | 3.37e-01 | 88.3% | 87.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4667626 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.67 | 54.0 | 5.29e-01 | 85.1% | 91.0% |
| 4069480 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.65 | 54.0 | 5.11e-01 | 88.3% | 85.5% |
| 3880101 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.65 | 35.0 | 3.28e-01 | 98.9% | 42.6% |
| 3716737 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.64 | 49.0 | 4.75e-01 | 88.3% | 74.3% |
| 4945001 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 54.0 | 5.39e-01 | 100.0% | 96.0% |
| 4487415 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.62 | 49.0 | 4.61e-01 | 86.2% | 80.0% |
| 3261938 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.62 | 52.0 | 4.81e-01 | 95.7% | 94.4% |
| 3412881 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.61 | 44.0 | 4.70e-01 | 81.9% | 90.0% |
| 4140783 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.60 | 49.0 | 4.87e-01 | 89.4% | 92.0% |
| 4520087 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.60 | 50.0 | 4.94e-01 | 92.6% | 92.0% |
| 4169335 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.59 | 49.0 | 4.85e-01 | 91.5% | 89.0% |
| 3740332 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.59 | 39.0 | 4.16e-01 | 90.4% | 80.0% |
| 4130034 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.56 | 45.0 | 4.32e-01 | 89.4% | 83.6% |
| 4636033 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.56 | 42.0 | 3.77e-01 | 93.6% | 55.6% |
| 3504160 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.56 | 44.0 | 4.27e-01 | 89.4% | 83.6% |
| 4028428 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.56 | 47.0 | 4.65e-01 | 95.7% | 98.0% |
| 3611276 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.54 | 46.0 | 4.54e-01 | 97.9% | 100.0% |
| 4364663 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.54 | 48.0 | 4.59e-01 | 100.0% | 86.4% |
| 3756888 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.54 | 43.0 | 3.65e-01 | 87.2% | 64.4% |
| 4317590 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 43.0 | 3.08e-01 | 91.5% | 60.6% |
| 4237904 | 148.1.3.17 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid | 0.53 | 46.0 | 4.13e-01 | 96.8% | 85.9% |
| 4857560 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 48.0 | 3.42e-01 | 100.0% | 48.0% |
| 3617721 | 180.1.1.7 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2_C | 0.53 | 43.0 | 3.26e-01 | 91.5% | 85.7% |
| 2141738 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.53 | 47.0 | 4.63e-01 | 100.0% | 96.0% |
| 5037104 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.52 | 42.0 | 3.82e-01 | 86.2% | 64.8% |
| 3875706 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.52 | 44.0 | 3.81e-01 | 95.7% | 76.1% |
| 4397294 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.52 | 45.0 | 3.99e-01 | 100.0% | 65.5% |
| 4334019 | 601.2.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › 7tm_1 | 0.52 | 41.0 | 3.01e-01 | 87.2% | 70.9% |
| 3779226 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 43.0 | 2.97e-01 | 92.6% | 62.6% |
| 4029481 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.51 | 44.0 | 2.91e-01 | 97.9% | 20.7% |