Back to structures

J-domain_protein

Euk-Vir

Adoxophyes_orana_nucleopolyhedrovirus

J-domain_protein__YP_002300563__Adoxophyes_orana_nucleopolyhedrovirus__542343

Identity

Accession:
YP_002300563 ↗
Protein ID:
J-domain_protein
Kingdom:
euk

Quality

70.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 157-232
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00076.29 best RRM_1 27.7 2.70e-06 80.3% 81.4%
D2 medium residues 25-88
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4j7zF00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.86 66.0 5.64e-01 89.1% 54.3%
2ys8A00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.84 65.0 5.70e-01 81.2% 61.1%
2ctqA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.82 63.0 5.44e-01 81.2% 59.6%
2qsaA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.78 70.0 5.90e-01 95.3% 66.3%
2guzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.77 65.0 6.26e-01 89.1% 81.7%
1wjzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.75 67.0 5.78e-01 95.3% 72.3%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.72 60.0 5.99e-01 90.6% 87.7%
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.70 53.0 4.36e-01 81.2% 57.4%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.69 52.0 4.30e-01 79.7% 83.0%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.69 48.0 4.34e-01 73.4% 73.6%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.69 55.0 5.42e-01 85.9% 91.0%
1q2lA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.67 58.0 4.00e-01 100.0% 67.5%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 52.0 4.48e-01 85.9% 82.2%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.66 45.0 4.04e-01 73.4% 51.7%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.64 47.0 3.68e-01 79.7% 70.2%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 52.0 4.82e-01 90.6% 97.6%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 51.0 4.34e-01 90.6% 82.0%
3rmiA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.63 50.0 4.27e-01 87.5% 64.8%
1k8kG00 1.25.40.190 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 0.62 45.0 3.55e-01 82.8% 36.0%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.62 45.0 3.88e-01 81.2% 79.3%
2y44A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.62 43.0 3.19e-01 75.0% 83.7%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 44.0 3.67e-01 75.0% 75.9%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 47.0 4.58e-01 85.9% 81.9%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 51.0 3.91e-01 93.8% 43.0%
3zdrA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.60 45.0 3.22e-01 82.8% 93.8%
4nbqB02 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.60 46.0 4.31e-01 85.9% 78.0%
2p0wA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 45.0 4.83e-01 85.9% 98.1%
1f5mA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 41.0 3.06e-01 79.7% 27.8%
3aq5A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 42.0 3.57e-01 85.9% 57.3%
6ofsA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 44.0 3.14e-01 92.2% 64.4%
2w3cA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 42.0 2.80e-01 84.4% 35.1%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.89e-01 98.4% 65.5%
4zohB03 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.54 46.0 4.04e-01 100.0% 94.1%
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 42.0 3.68e-01 95.3% 78.1%
4xxiA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.53 41.0 3.29e-01 90.6% 62.6%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 44.0 3.21e-01 100.0% 92.6%
4i4cB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 42.0 2.66e-01 95.3% 55.5%
2hsnA02 1.20.1050.110 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 41.0 3.55e-01 93.8% 73.8%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3227944 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.88 69.0 6.46e-01 81.2% 69.3%
3598382 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.87 68.0 5.41e-01 81.2% 47.8%
3237045 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.87 69.0 6.32e-01 82.8% 70.0%
3733932 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.87 68.0 6.18e-01 81.2% 70.0%
3248611 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.86 66.0 5.94e-01 81.2% 64.7%
3319356 650.1.1.5 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › CPP1-like 0.85 65.0 6.52e-01 92.2% 78.5%
3673819 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.85 69.0 6.47e-01 84.4% 74.7%
3318086 650.1.1.5 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › CPP1-like 0.85 62.0 5.89e-01 81.2% 65.3%
3712974 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.85 67.0 6.01e-01 82.8% 69.4%
3508753 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.85 67.0 5.75e-01 82.8% 63.2%
3299709 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.85 67.0 5.51e-01 82.8% 55.2%
2594396 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.84 65.0 6.00e-01 81.2% 68.8%
4464578 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.84 65.0 6.34e-01 81.2% 78.6%
3900766 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.84 67.0 5.25e-01 82.8% 46.7%
3641455 109.4.1.1171 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm_PDR 0.83 69.0 4.73e-01 87.5% 29.2%
3781682 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.83 67.0 6.16e-01 87.5% 67.5%
3705465 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.83 63.0 5.80e-01 79.7% 63.7%
4027984 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.83 63.0 5.80e-01 79.7% 63.7%
4260118 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.83 66.0 6.01e-01 82.8% 67.5%
3251141 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.83 76.0 6.36e-01 100.0% 64.8%
4025651 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.82 66.0 5.67e-01 84.4% 56.8%
3806318 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.82 69.0 5.76e-01 87.5% 57.0%
5082918 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.82 69.0 5.25e-01 87.5% 46.2%
3335438 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.82 68.0 5.84e-01 87.5% 60.0%
996952 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.82 63.0 5.65e-01 81.2% 65.9%
3710152 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.82 64.0 6.23e-01 87.5% 75.7%
4028226 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.81 66.0 5.57e-01 85.9% 60.0%
3857799 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.81 75.0 6.24e-01 100.0% 64.8%
3562783 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.81 67.0 5.31e-01 87.5% 52.9%
3261684 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.80 65.0 6.01e-01 85.9% 72.5%
3798465 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.80 63.0 6.30e-01 82.8% 81.5%
3255149 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.80 69.0 6.67e-01 100.0% 84.3%
3789564 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.80 64.0 5.22e-01 84.4% 50.9%
3428914 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.80 64.0 6.90e-01 84.4% 100.0%
3713038 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.80 66.0 6.06e-01 87.5% 72.5%
3728950 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.80 66.0 6.21e-01 87.5% 74.7%
3991964 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.80 65.0 6.30e-01 85.9% 81.4%
3835161 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.79 71.0 5.97e-01 95.3% 71.0%
3380775 650.1.1.10 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › PF30912 0.79 64.0 6.94e-01 87.5% 100.0%
3726260 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.79 66.0 5.12e-01 89.1% 43.8%
3645559 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.79 72.0 6.30e-01 96.9% 75.6%
3610209 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.79 64.0 6.41e-01 90.6% 84.6%
3252902 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.79 64.0 5.67e-01 84.4% 63.5%
3677602 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.78 70.0 6.21e-01 93.8% 72.9%
3592602 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.78 63.0 5.75e-01 84.4% 68.8%
3491643 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.78 63.0 6.82e-01 90.6% 100.0%
3810988 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.78 71.0 5.71e-01 100.0% 54.8%
3553376 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.78 68.0 5.67e-01 93.8% 66.7%
3343320 109.4.1.1171 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm_PDR 0.78 66.0 4.40e-01 92.2% 25.1%
3448960 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.78 66.0 5.99e-01 92.2% 69.4%
3378525 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.77 72.0 5.98e-01 100.0% 68.6%
3635163 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.77 67.0 5.89e-01 92.2% 67.8%
3255271 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.77 66.0 6.23e-01 100.0% 78.7%
3592487 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.77 61.0 5.39e-01 84.4% 65.6%
3820448 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.77 63.0 4.80e-01 87.5% 44.3%
3601089 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.77 65.0 5.97e-01 90.6% 71.2%
3939282 650.1.1.10 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › PF30912 0.77 65.0 6.11e-01 90.6% 76.0%
3897399 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.77 64.0 5.92e-01 90.6% 71.2%
3332696 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.77 68.0 5.34e-01 93.8% 66.7%
3699724 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.76 64.0 6.20e-01 90.6% 81.4%
5057661 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.76 64.0 5.70e-01 95.3% 67.1%
4425738 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.76 62.0 5.92e-01 98.4% 76.0%
3703191 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.74 66.0 5.53e-01 95.3% 60.0%
3296868 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.74 57.0 5.72e-01 82.8% 81.5%
4427313 650.1.1.2 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Pam16 0.74 64.0 5.48e-01 98.4% 61.2%
3968363 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.74 61.0 6.31e-01 95.3% 93.3%
3636426 650.1.1.11 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › RPT 0.71 58.0 5.77e-01 87.5% 86.2%
3789554 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.66 51.0 4.58e-01 84.4% 86.7%
3277087 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.66 46.0 4.09e-01 75.0% 56.8%
4948274 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.65 52.0 4.95e-01 87.5% 90.7%
4028015 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.63 46.0 4.59e-01 81.2% 76.9%
3952621 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.63 47.0 4.65e-01 81.2% 81.2%
3234742 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.62 50.0 4.46e-01 87.5% 74.4%
4124450 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.61 45.0 4.44e-01 81.2% 82.4%
3395173 109.4.1.931 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_HPS5_insect 0.60 47.0 3.12e-01 87.5% 20.7%
4580730 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.60 47.0 4.81e-01 85.9% 95.0%
5044192 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.57 47.0 2.92e-01 100.0% 16.0%
3261803 633.24.1.0 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.55 44.0 4.08e-01 92.2% 92.9%
4960526 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.55 43.0 4.04e-01 87.5% 97.5%
4028331 1203.1.2.0 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 0.53 44.0 3.34e-01 100.0% 79.8%
3406437 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.51 44.0 3.83e-01 100.0% 65.0%