←Back to structures

J02501.1__AAA32606.1__X__00001

Bact-Vir

J02501.1__AAA32606.1__X__00001

Identity

Accession:
J02501 ↗
Kingdom:
phage

Quality

77.8 mean pLDDT

Taxonomy

Sangervirae› Phixviricota› Malgrandaviricetes› Petitvirales› Microviridae› Alphatrevirus› Escherichia_phage_St-1

TaxID: 10845

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-101
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02306.21 best Phage_G 53.3 4.10e-14 99.0% 49.7%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m06G00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.80 68.0 5.45e-01 90.1% 49.7%
2bpa200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.80 65.0 5.36e-01 91.1% 50.3%
1gff200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.79 67.0 5.48e-01 90.1% 51.4%
5mi7A03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.69 35.0 2.57e-01 88.1% 18.2%
4xl1E01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 55.0 4.82e-01 94.1% 93.5%
2x10A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 52.0 4.46e-01 89.1% 56.2%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 44.0 4.01e-01 90.1% 54.4%
4zchA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.62 45.0 4.19e-01 90.1% 60.0%
7ui8A01 2.60.40.3930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 41.0 4.15e-01 73.3% 67.6%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 4.65e-01 88.1% 80.0%
2qngA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.61 50.0 4.28e-01 90.1% 63.6%
5c86A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 4.67e-01 89.1% 80.2%
3wo4C03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 4.36e-01 90.1% 73.0%
5nfiB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 46.0 4.23e-01 85.1% 91.0%
4m8rA01 2.60.40.3920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 4.24e-01 91.1% 77.7%
2eefA01 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.57 44.0 4.14e-01 90.1% 66.9%
4geiA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 47.0 4.17e-01 92.1% 82.6%
3oc5A02 2.60.40.3240 Mainly Beta › Sandwich › Immunoglobulin-like › Vibrio cholerae toxin co-regulated pilus biosynthesis protein F, C-terminal domain 0.55 45.0 4.04e-01 88.1% 73.0%
5u8rA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.36e-01 90.1% 81.5%
4u33A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 4.02e-01 92.1% 71.2%
6x5vA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.96e-01 88.1% 76.0%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.97e-01 94.1% 94.7%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.85e-01 94.1% 62.5%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.65e-01 92.1% 57.1%
2vtcA00 2.70.50.70 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › 0.53 43.0 3.40e-01 92.1% 46.5%
3lnnA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.52 29.0 3.09e-01 70.3% 59.3%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.59e-01 90.1% 60.0%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 35.0 3.62e-01 84.2% 76.8%
2kinA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.50 39.0 3.02e-01 84.2% 67.2%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1193 10.2.1.27 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Phage_G 0.80 68.0 5.45e-01 90.1% 49.7%
30827 10.2.1.27 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Phage_G 0.79 67.0 5.48e-01 90.1% 51.4%
3230800 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 45.0 4.53e-01 80.2% 63.8%
3618250 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.64 53.0 4.55e-01 89.1% 95.0%
3576119 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.64 54.0 4.67e-01 95.0% 93.3%
3584519 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.63 55.0 4.80e-01 98.0% 91.6%
5040537 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 47.0 4.60e-01 86.1% 73.6%
3478158 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 47.0 4.42e-01 90.1% 65.6%
4947556 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 46.0 4.12e-01 80.2% 58.0%
5050088 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 43.0 3.48e-01 88.1% 36.6%
3909606 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 43.0 4.22e-01 84.2% 68.2%
4981506 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 44.0 4.45e-01 92.1% 78.0%
2883197 12.1.1.25 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Fucosidase_C 0.59 34.0 3.46e-01 75.2% 55.3%
4970082 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 48.0 4.14e-01 90.1% 78.2%
4028719 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.59 48.0 4.30e-01 90.1% 90.3%
3242721 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.58 48.0 4.14e-01 92.1% 74.2%
4954925 11.1.1.1064 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27409 0.58 40.0 3.99e-01 75.2% 69.5%
4943899 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 38.0 3.80e-01 75.2% 63.6%
4114364 11.1.1.21 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tissue_fac 0.57 43.0 4.33e-01 91.1% 79.0%
3472656 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 41.0 4.00e-01 93.1% 69.1%
5030467 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 4.00e-01 80.2% 70.9%
3517524 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.98e-01 74.3% 76.8%
3927166 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 43.0 4.12e-01 93.1% 73.9%
5035102 11.1.1.1403 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 0.54 45.0 3.78e-01 92.1% 68.0%
3726653 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.52e-01 84.2% 69.4%
3518416 11.1.1.1075 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › B9-C2 0.54 43.0 4.01e-01 88.1% 81.5%
4955021 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 4.22e-01 91.1% 97.4%
3481725 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 40.0 4.18e-01 98.0% 87.4%
3264859 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.96e-01 80.2% 82.9%
5041131 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 42.0 3.94e-01 88.1% 74.4%
3762945 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.81e-01 88.1% 66.4%
5042763 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.52 42.0 3.51e-01 92.1% 91.3%
3742699 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.52 44.0 3.85e-01 96.0% 96.9%
3331566 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 4.00e-01 87.1% 83.5%
3482787 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.42e-01 91.1% 56.1%
3400086 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.52 42.0 3.78e-01 90.1% 80.0%
3518493 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 43.0 3.97e-01 92.1% 76.9%
3699639 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 38.0 2.82e-01 80.2% 63.4%
4998047 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 4.11e-01 100.0% 74.8%
4230510 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 35.0 2.81e-01 94.1% 33.2%
3922399 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 39.0 3.72e-01 91.1% 68.8%
3507753 11.1.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida 0.50 35.0 3.41e-01 74.3% 71.7%
4270536 1.1.7.96 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FIST_C 0.50 34.0 3.49e-01 73.3% 71.0%
3415092 11.1.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida 0.50 42.0 3.62e-01 95.0% 72.4%