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J04354.1__AAA88464.1__X__00001

Bact-Vir

J04354.1__AAA88464.1__X__00001

Identity

Accession:
J04354 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Escherichia_phage_T4

TaxID: 2681598

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-26
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 53.0 3.55e-01 100.0% 20.2%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 49.0 3.14e-01 84.6% 15.9%
3vwoA02 2.10.70.40 Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase 0.66 49.0 4.00e-01 76.9% 80.4%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 47.0 3.04e-01 84.6% 15.9%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 48.0 3.32e-01 80.8% 30.0%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.66 46.0 2.74e-01 96.2% 30.6%
4n01A01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.65 48.0 3.26e-01 84.6% 18.8%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.65 48.0 3.75e-01 100.0% 57.7%
5cqgA02 3.10.10.20 Alpha Beta › Roll › HIV Type 1 Reverse Transcriptase; Chain A, domain 1 › 0.65 46.0 3.61e-01 88.5% 31.9%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 43.0 2.75e-01 92.3% 17.4%
2fdoA00 3.30.1970.10 Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like 0.63 46.0 3.37e-01 92.3% 29.0%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.63 45.0 2.56e-01 80.8% 6.6%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.61 43.0 2.81e-01 80.8% 30.1%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.61 43.0 3.40e-01 88.5% 68.8%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 46.0 3.36e-01 100.0% 51.6%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.60 42.0 4.01e-01 80.8% 51.2%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.60 44.0 3.43e-01 92.3% 54.9%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.60 46.0 2.66e-01 92.3% 7.4%
2b0aA00 3.50.30.50 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase 0.59 43.0 2.76e-01 100.0% 84.4%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.59 46.0 2.50e-01 80.8% 4.1%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.59 43.0 3.15e-01 100.0% 25.0%
3ksrA01 6.20.370.100 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.59 43.0 4.29e-01 73.1% 76.0%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.58 39.0 2.29e-01 100.0% 81.1%
2fqmA01 6.10.140.830 Special › Helix non-globular › Helix Hairpins › 0.58 39.0 3.71e-01 96.2% 63.0%
5e0sB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.58 39.0 2.53e-01 100.0% 21.4%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 40.0 2.55e-01 80.8% 11.4%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.57 42.0 2.50e-01 88.5% 9.3%
2azeB00 6.10.250.540 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 41.0 3.04e-01 96.2% 24.8%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.57 43.0 2.84e-01 80.8% 15.7%
1y4uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 39.0 2.55e-01 96.2% 27.3%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.56 39.0 2.25e-01 96.2% 38.1%
4i1sB00 4.10.80.340 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.56 39.0 3.50e-01 96.2% 92.3%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 38.0 2.43e-01 100.0% 60.7%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 41.0 3.02e-01 73.1% 21.1%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 35.0 2.38e-01 100.0% 14.2%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 43.0 2.57e-01 80.8% 8.5%
2v4jB03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 42.0 3.41e-01 96.2% 60.0%
2sliA03 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.55 45.0 3.16e-01 76.9% 20.0%
3ejkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 34.0 2.42e-01 100.0% 82.8%
1cksB00 3.30.170.10 Alpha Beta › 2-Layer Sandwich › Cyclin-Dependent Kinase Subunit Type 2 › Cyclin-dependent kinase, regulatory subunit 0.54 37.0 3.08e-01 100.0% 34.6%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 2.92e-01 100.0% 30.5%
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.54 41.0 3.65e-01 73.1% 42.2%
3emiA00 3.90.1780.10 Alpha Beta › Alpha-Beta Complex › Trimeric adhesin › Trimeric adhesin 0.54 39.0 2.79e-01 80.8% 19.1%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 41.0 2.63e-01 76.9% 12.4%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 3.53e-01 73.1% 42.2%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.07e-01 76.9% 27.0%
1r61A00 3.50.30.50 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase 0.52 33.0 2.18e-01 100.0% 82.4%
1np6A02 2.20.25.120 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 39.0 4.02e-01 80.8% 74.1%
2rblA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 34.0 3.51e-01 96.2% 96.4%
2r7fA03 4.10.80.30 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 6 0.51 35.0 3.15e-01 80.8% 100.0%
3w3aG00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 37.0 2.36e-01 96.2% 25.2%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 2.32e-01 76.9% 8.6%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5028806 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.73 54.0 3.09e-01 76.9% 7.8%
3514826 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.71 56.0 5.02e-01 100.0% 73.3%
3708849 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.70 50.0 2.90e-01 84.6% 8.6%
3962463 4011.1.1.0 ↗ beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins 0.69 52.0 4.21e-01 80.8% 38.2%
3867638 109.4.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.69 49.0 2.79e-01 73.1% 6.1%
3722655 312.1.1.11 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › Ap4A_phos_N 0.67 46.0 2.99e-01 100.0% 15.6%
3509949 389.1.1.9 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_2 0.66 52.0 4.95e-01 100.0% 94.3%
3672236 4188.1.1.1 ↗ a+b complex topology › BB1717-like › BB1717-like › BB1717-like › SRAP 0.66 46.0 2.99e-01 92.3% 14.7%
4977171 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.65 41.0 3.90e-01 100.0% 48.1%
3415024 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.64 44.0 2.62e-01 100.0% 32.8%
4883780 135.1.1.0 ↗ alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain 0.63 43.0 4.46e-01 100.0% 89.7%
3684015 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 47.0 3.42e-01 96.2% 82.0%
3514835 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.62 46.0 4.26e-01 100.0% 73.3%
4197044 3433.1.2.0 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain 0.62 45.0 3.95e-01 96.2% 46.0%
4024146 361.1.1.1 ↗ few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG 0.61 49.0 4.15e-01 92.3% 64.0%
5049092 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.61 47.0 2.70e-01 88.5% 7.5%
5079277 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.60 44.0 3.71e-01 84.6% 37.9%
3289385 3433.1.2.1 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.59 41.0 3.71e-01 96.2% 46.0%
3673110 387.1.5.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.59 47.0 4.18e-01 76.9% 47.5%
3888049 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 40.0 2.75e-01 92.3% 16.9%
3472076 101.1.1.7 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Ribosomal_S18 0.59 42.0 2.84e-01 80.8% 15.6%
3743600 109.4.1.1297 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.59 44.0 2.34e-01 76.9% 2.6%
5050062 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.58 37.0 3.38e-01 96.2% 43.3%
3567388 4154.1.1.2 ↗ beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F_CC-MB 0.58 39.0 2.92e-01 96.2% 22.9%
4791706 304.126.1.4 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I_N 0.58 41.0 3.38e-01 100.0% 35.1%
4848452 135.1.1.1 ↗ alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha 0.57 40.0 3.74e-01 100.0% 57.1%
5031362 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.57 40.0 3.47e-01 96.2% 46.7%
3680162 375.1.1.148 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RPA_interact_C 0.57 45.0 4.34e-01 84.6% 68.6%
5078945 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.57 38.0 3.32e-01 100.0% 38.5%
3666479 109.4.1.1156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.57 39.0 2.57e-01 80.8% 13.5%
3245887 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.56 43.0 4.14e-01 80.8% 60.0%
3208120 633.23.1.22 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.56 39.0 2.64e-01 100.0% 19.4%
3700833 2004.1.1.442 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.56 48.0 2.93e-01 76.9% 11.4%
5031928 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 39.0 3.54e-01 96.2% 49.1%
3367891 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.55 41.0 2.38e-01 88.5% 20.3%
3616718 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.55 41.0 2.30e-01 80.8% 5.1%
3605370 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.55 43.0 3.59e-01 80.8% 38.3%
4928755 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 39.0 3.35e-01 73.1% 40.0%
3468311 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.54 39.0 2.24e-01 80.8% 5.8%
4934807 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 37.0 3.14e-01 96.2% 36.0%
3426409 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.54 42.0 4.22e-01 80.8% 70.0%
3419693 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.54 36.0 2.35e-01 96.2% 11.3%
4124100 3433.1.2.1 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.54 39.0 3.61e-01 92.3% 53.3%
3349668 208.1.1.5 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › UDPGP 0.53 37.0 2.40e-01 80.8% 11.7%
4142311 109.4.1.1297 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.53 40.0 2.20e-01 76.9% 3.4%
5012674 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 37.0 3.04e-01 80.8% 30.0%
3994220 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 36.0 2.29e-01 84.6% 21.7%
3648156 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.52 43.0 2.52e-01 76.9% 7.0%
4967269 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.51 36.0 3.30e-01 80.8% 41.8%
3364208 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.51 38.0 2.20e-01 76.9% 5.6%
4888882 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.50 31.0 2.11e-01 100.0% 13.6%