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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00009

Bact-Vir

JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00009

Identity

Kingdom:
phage

Quality

95.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 25-76
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 62.0 5.65e-01 82.7% 62.1%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 55.0 5.83e-01 80.8% 95.6%
3ckyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.65 49.0 3.71e-01 84.6% 83.6%
3pfiA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.34e-01 84.6% 84.9%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 46.0 4.69e-01 78.8% 98.0%
2nogB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 47.0 4.35e-01 88.5% 85.7%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.59 42.0 4.14e-01 84.6% 73.2%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 41.0 3.38e-01 88.5% 77.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3248148 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.88 66.0 7.00e-01 80.8% 91.1%
4966033 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.87 71.0 6.80e-01 88.5% 77.6%
3922450 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.86 63.0 7.02e-01 78.8% 100.0%
3166124 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 67.0 6.94e-01 94.2% 98.0%
3721414 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.79 59.0 6.25e-01 80.8% 95.6%
4959580 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 62.0 6.33e-01 96.2% 90.0%
4938260 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 63.0 6.02e-01 98.1% 76.7%
4961949 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.76 64.0 6.32e-01 96.2% 89.1%
4927068 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.75 65.0 6.46e-01 96.2% 90.9%
4928774 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 62.0 6.15e-01 94.2% 87.3%
4952293 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.74 53.0 5.77e-01 82.7% 100.0%
1267973 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 59.0 5.37e-01 94.2% 69.4%
4116979 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.65 51.0 4.86e-01 90.4% 89.2%
4206301 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.64 47.0 4.46e-01 82.7% 83.1%
3792 603.1.1.6 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.52 41.0 3.38e-01 88.5% 77.3%