←Back to structures

JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00017

Bact-Vir

JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00017

Identity

Kingdom:
phage

Quality

66.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-154
PDB
Domain cluster: rep: IMGVR_UViG_3300002120_000001-3300002120-C687J26616_10000003128__D2-210
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yllA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 35.0 4.35e-01 79.6% 79.3%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 52.0 4.56e-01 78.3% 79.4%
1upsB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 52.0 4.27e-01 79.6% 79.2%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 52.0 4.26e-01 79.6% 73.8%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 61.0 5.15e-01 96.1% 88.8%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.67 44.0 4.79e-01 92.8% 80.0%
4lplA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 45.0 4.67e-01 77.6% 76.8%
4ccdA03 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.63 49.0 4.44e-01 80.9% 79.0%
3wnoA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 42.0 4.50e-01 79.6% 79.2%
1guiA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 44.0 4.44e-01 78.3% 72.9%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 44.0 4.55e-01 73.7% 97.2%
3c7fA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 41.0 4.31e-01 78.3% 73.9%
1cx1A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 46.0 4.61e-01 79.6% 77.1%
2wz8A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 41.0 4.38e-01 78.3% 79.3%
7vcoA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 46.0 4.67e-01 80.3% 94.0%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 52.0 4.70e-01 92.8% 88.9%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.59 38.0 4.50e-01 70.4% 95.2%
1ju3A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 45.0 3.99e-01 79.6% 85.3%
2zxqA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 44.0 4.35e-01 78.3% 75.5%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 33.0 3.84e-01 92.1% 78.5%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.58 44.0 4.39e-01 80.9% 77.2%
2qfeA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 4.61e-01 96.7% 87.8%
4cu9A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 43.0 4.17e-01 79.6% 80.9%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 43.0 4.06e-01 78.3% 78.8%
1w9sA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 40.0 4.28e-01 78.3% 82.8%
3zxaC02 2.60.40.3420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 36.0 4.23e-01 77.6% 92.5%
2qngA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.56 46.0 4.47e-01 86.2% 93.9%
3h7jA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 33.0 3.74e-01 78.9% 78.2%
1od3A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 39.0 4.13e-01 71.1% 98.5%
4es8B01 2.60.120.1240 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 3.81e-01 78.3% 68.4%
4fcaA01 2.60.120.1250 Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 0.55 38.0 4.44e-01 94.7% 100.0%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.55 42.0 4.37e-01 80.3% 92.2%
3ghmA03 2.60.120.830 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 4.28e-01 91.4% 85.9%
4xw3A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.54 47.0 4.40e-01 96.1% 86.8%
3no8A00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.53 44.0 4.44e-01 99.3% 87.9%
4qt6A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.53 42.0 4.18e-01 84.2% 91.2%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 37.0 4.14e-01 79.6% 94.8%
2wraA00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.52 36.0 3.92e-01 93.4% 87.7%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 4.26e-01 99.3% 99.2%
4madA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 37.0 3.92e-01 78.9% 85.8%
2o14A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 38.0 3.94e-01 79.6% 90.5%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082958 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.80 62.0 5.67e-01 79.6% 65.3%
3251374 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.80 75.0 6.30e-01 99.3% 99.2%
4058971 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.72 67.0 5.97e-01 100.0% 98.1%
3485287 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.70 65.0 5.84e-01 99.3% 97.1%
4354023 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.70 64.0 5.97e-01 100.0% 97.9%
3401269 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.68 63.0 5.28e-01 100.0% 96.4%
3485600 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.66 61.0 5.24e-01 99.3% 99.6%
3221268 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.65 60.0 5.99e-01 98.7% 99.4%
4960907 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 39.0 4.66e-01 75.7% 92.0%
3609103 10.34.1.1 ↗ beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain › CLP1_N 0.63 37.0 4.48e-01 97.4% 90.5%
3928274 10.4.1.27 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF29839 0.63 41.0 4.90e-01 92.8% 100.0%
4946055 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.62 39.0 4.59e-01 78.9% 91.4%
3974326 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.62 35.0 3.82e-01 94.7% 65.6%
3178885 10.1.1.16 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 0.61 54.0 4.82e-01 94.7% 96.2%
4960904 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.61 39.0 4.50e-01 78.9% 89.1%
3360768 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 45.0 4.86e-01 97.4% 94.4%
3513205 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.60 39.0 4.36e-01 78.9% 85.2%
3265682 10.32.1.255 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF28714 0.60 45.0 4.17e-01 78.3% 81.0%
4021243 10.1.1.16 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 0.60 53.0 4.62e-01 94.7% 90.6%
3926732 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.60 48.0 4.86e-01 90.8% 85.3%
4026943 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 38.0 4.23e-01 79.6% 81.7%
5033462 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 50.0 4.98e-01 98.7% 86.9%
3772640 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.58 41.0 4.44e-01 92.8% 88.0%
3992449 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.57 49.0 5.00e-01 90.1% 94.5%
3384843 207.1.1.119 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_13 0.57 43.0 3.53e-01 94.7% 42.1%
3312078 207.1.1.119 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_13 0.57 45.0 3.72e-01 97.4% 46.1%
5059835 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 40.0 4.28e-01 79.6% 85.3%
5027599 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 37.0 4.27e-01 78.3% 93.5%
3290666 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 40.0 4.15e-01 78.3% 77.2%
5038393 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 45.0 4.76e-01 96.7% 94.8%
3607284 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 43.0 4.65e-01 96.1% 95.4%
5046609 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 36.0 4.27e-01 71.1% 95.2%
4071322 10.32.1.18 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.55 41.0 4.11e-01 78.9% 80.6%
3214979 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.54 47.0 4.44e-01 94.7% 89.7%
3486378 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 47.0 4.33e-01 96.1% 83.0%
3478889 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 45.0 4.46e-01 89.5% 99.4%
4166761 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.54 47.0 4.28e-01 96.1% 81.0%
3267687 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 37.0 4.16e-01 71.7% 100.0%
3613740 304.44.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.54 43.0 4.37e-01 84.9% 96.1%
5046040 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 35.0 4.08e-01 70.4% 95.2%
4307195 10.32.1.31 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.53 45.0 3.99e-01 91.4% 86.2%
3990502 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 47.0 3.43e-01 96.1% 40.5%
3849254 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 37.0 4.25e-01 76.3% 99.1%
3490520 10.32.1.228 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SID-1_RNA_chan 0.53 37.0 4.05e-01 79.6% 89.2%
4963992 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 4.25e-01 99.3% 90.4%
3607499 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 41.0 4.25e-01 83.6% 99.3%
401494 10.32.1.19 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.51 39.0 4.26e-01 99.3% 99.2%
3479505 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.51 40.0 3.98e-01 91.4% 80.6%
3217931 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 43.0 4.16e-01 91.4% 89.1%
3519566 10.32.1.230 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › NDNF_N 0.51 39.0 4.09e-01 78.9% 91.9%
D2 high residues 185-286
PDB
D3 medium residues 295-349
PDB