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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00030
Bact-VirJBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00030
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-93
Domain cluster:
rep: MK448722.1__QBX16679.1__Javan269_0038__00038__D2-70
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13408.13 best | Zn_ribbon_recom | 27.8 | 3.60e-06 | 61.9% | 87.9% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2d0bA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.66 | 32.0 | 3.19e-01 | 98.8% | 43.8% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.66 | 33.0 | 3.58e-01 | 98.8% | 56.9% |
| 3vn5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.63 | 32.0 | 3.47e-01 | 98.8% | 58.0% |
| 4gp0B02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.56 | 38.0 | 3.39e-01 | 70.2% | 83.7% |
| 1x9zA01 | 3.30.1540.20 | Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain | 0.55 | 42.0 | 4.13e-01 | 100.0% | 74.2% |
| 2ymsC00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.55 | 39.0 | 4.10e-01 | 100.0% | 82.7% |
| 3of7A00 | 2.130.10.30 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | 0.54 | 45.0 | 2.87e-01 | 91.7% | 29.9% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.53 | 28.0 | 3.08e-01 | 100.0% | 60.6% |
| 5wb2B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 30.0 | 3.22e-01 | 86.9% | 61.6% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 30.0 | 3.33e-01 | 90.5% | 70.1% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 40.0 | 4.30e-01 | 83.3% | 98.6% |
| 7a0kA01 | 2.130.10.30 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | 0.52 | 46.0 | 3.26e-01 | 98.8% | 99.6% |
| 6g6qA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 43.0 | 3.61e-01 | 90.5% | 70.8% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 37.0 | 3.66e-01 | 77.4% | 98.9% |
| 3ipjA01 | 3.30.1360.60 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB | 0.51 | 37.0 | 3.84e-01 | 82.1% | 81.2% |
| 2m2lA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 29.0 | 3.16e-01 | 85.7% | 68.7% |
| 4b1bA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 41.0 | 2.57e-01 | 86.9% | 52.9% |
| 2w18A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 43.0 | 2.95e-01 | 96.4% | 79.7% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4986651 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.76 | 38.0 | 4.05e-01 | 83.3% | 54.7% |
| 4447285 | 331.1.1.6 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 | 0.72 | 32.0 | 3.57e-01 | 96.4% | 51.4% |
| 4659650 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.68 | 33.0 | 3.25e-01 | 98.8% | 43.3% |
| 4952379 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.67 | 47.0 | 3.26e-01 | 72.6% | 29.8% |
| 4679871 | 331.1.1.6 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 | 0.63 | 31.0 | 3.22e-01 | 98.8% | 50.0% |
| 5023356 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.60 | 53.0 | 3.49e-01 | 97.6% | 46.9% |
| 4996887 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.60 | 53.0 | 3.69e-01 | 98.8% | 57.1% |
| 4960065 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.59 | 53.0 | 3.72e-01 | 98.8% | 61.2% |
| 5066751 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.59 | 52.0 | 3.42e-01 | 96.4% | 45.6% |
| 3593233 | 719.2.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like | 0.58 | 42.0 | 3.97e-01 | 95.2% | 61.9% |
| 3784273 | 2003.1.2.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like | 0.55 | 42.0 | 2.62e-01 | 81.0% | 58.3% |
| 3619501 | 5.1.4.258 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 | 0.55 | 45.0 | 3.06e-01 | 89.3% | 52.5% |
| 4998989 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.55 | 47.0 | 3.31e-01 | 96.4% | 55.3% |
| 3088269 | 5.1.4.255 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, WD40_RLD | 0.55 | 45.0 | 4.02e-01 | 88.1% | 93.0% |
| 3932476 | 5.1.4.258 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 | 0.53 | 46.0 | 3.00e-01 | 96.4% | 77.4% |
| 3924808 | 719.2.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like | 0.53 | 40.0 | 4.07e-01 | 96.4% | 86.3% |
| 4593126 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.53 | 38.0 | 2.56e-01 | 78.6% | 97.9% |
| 3549931 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.53 | 46.0 | 2.93e-01 | 100.0% | 55.2% |
| 3388897 | 5.1.4.407 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, Alsin_RLD | 0.52 | 46.0 | 2.97e-01 | 96.4% | 85.8% |
| 3744704 | 5.1.4.173 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd | 0.52 | 46.0 | 3.07e-01 | 100.0% | 91.5% |
| 3741619 | 5.1.4.258 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 | 0.52 | 45.0 | 2.87e-01 | 95.2% | 42.6% |
| 3785678 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.52 | 35.0 | 3.89e-01 | 76.2% | 89.2% |
| 3741960 | 5.1.4.242 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N | 0.52 | 46.0 | 3.11e-01 | 98.8% | 98.8% |
| 3734415 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.52 | 38.0 | 2.67e-01 | 81.0% | 90.9% |
| 4891036 | 5.1.5.92 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_EML | 0.51 | 46.0 | 3.17e-01 | 100.0% | 97.3% |
| 3812622 | 5.1.4.404 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IP5PC_F | 0.51 | 45.0 | 2.94e-01 | 100.0% | 95.9% |
| 4588355 | 2003.1.2.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 39.0 | 2.82e-01 | 86.9% | 61.1% |
| 4018697 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.50 | 36.0 | 2.59e-01 | 79.8% | 95.6% |
| 4018320 | 5.1.8.3 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › WD40 | 0.50 | 39.0 | 3.03e-01 | 84.5% | 40.5% |
| 3786666 | 5.1.4.258 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 | 0.50 | 44.0 | 3.05e-01 | 98.8% | 82.4% |