Back to structures

JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00046

Bact-Vir

JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00046

Identity

Kingdom:
phage

Quality

66.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-108
PDB
D2 medium residues 120-217
PDB
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2djhA00 3.30.2310.30 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Colicin E5 C-terminal ribonuclease domain (CRD) 0.70 54.0 5.54e-01 82.7% 89.6%
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.65 53.0 5.63e-01 86.7% 100.0%
1qhuA01 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.63 43.0 3.51e-01 100.0% 37.7%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 4.00e-01 77.6% 95.0%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.58 45.0 2.90e-01 100.0% 18.1%
1fwxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 50.0 3.27e-01 100.0% 29.1%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 44.0 3.10e-01 100.0% 26.7%
4j87A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 38.0 2.67e-01 100.0% 21.2%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.55 43.0 3.48e-01 100.0% 42.9%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 49.0 4.13e-01 100.0% 79.8%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.54 36.0 3.90e-01 76.5% 79.8%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.12e-01 100.0% 75.6%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.26e-01 100.0% 39.2%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 44.0 3.43e-01 89.8% 74.1%
3lp9A00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.53 44.0 3.45e-01 100.0% 41.0%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 47.0 4.15e-01 99.0% 90.8%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.52 41.0 3.29e-01 100.0% 42.3%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.51 45.0 2.99e-01 100.0% 41.2%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 3.05e-01 100.0% 28.5%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 2.93e-01 100.0% 62.3%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 29.0 2.72e-01 75.5% 45.4%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.50 44.0 3.68e-01 100.0% 91.0%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2089781 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.73 53.0 5.57e-01 81.6% 84.1%
3988707 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 39.0 5.03e-01 80.6% 96.4%
3379168 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.69 35.0 4.32e-01 81.6% 77.8%
3279135 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 44.0 3.10e-01 100.0% 23.4%
4968316 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.62 50.0 5.27e-01 90.8% 94.3%
3457581 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.62 52.0 3.54e-01 100.0% 25.3%
1400361 5.1.3.34 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF5128 0.60 44.0 2.99e-01 100.0% 21.2%
3895142 5.1.3.216 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_HPS5 0.59 49.0 4.02e-01 100.0% 47.9%
3982278 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.59 42.0 4.35e-01 73.5% 91.1%
3275700 6043.1.1.4 a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.59 42.0 3.08e-01 74.5% 36.5%
3213275 5.1.4.158 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.58 51.0 3.46e-01 100.0% 26.1%
4195544 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.58 41.0 2.66e-01 100.0% 16.1%
4381919 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.57 51.0 3.40e-01 100.0% 51.7%
3482099 5.1.4.237 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_2nd 0.56 48.0 3.68e-01 96.9% 55.7%
None 0.55 49.0 3.20e-01 100.0% 40.2%
3995302 5.1.4.158 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.55 48.0 3.19e-01 100.0% 26.8%
4230177 2.8.1.2 beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 0.54 36.0 4.06e-01 89.8% 94.3%
3651019 5.1.4.101 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.54 48.0 3.52e-01 100.0% 36.4%
3887745 220.1.1.149 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF4551 0.54 44.0 3.91e-01 88.8% 92.1%
3797604 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 41.0 2.81e-01 100.0% 22.9%
5077103 5.1.11.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › PQQ_2 0.53 46.0 3.04e-01 100.0% 42.2%
3490808 5.1.4.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.53 46.0 3.12e-01 100.0% 51.6%
5036626 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 40.0 2.63e-01 100.0% 19.0%
3408563 5.1.4.661 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.53 40.0 2.84e-01 100.0% 26.3%
3496765 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 46.0 2.97e-01 100.0% 46.7%
3921504 5.1.4.428 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, LLGL, Lgl_C 0.51 46.0 2.68e-01 100.0% 20.3%
5001484 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.51 44.0 3.02e-01 100.0% 27.5%
3286423 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 46.0 3.11e-01 100.0% 62.4%
3854218 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.51 44.0 3.50e-01 100.0% 47.5%
3616618 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 3.07e-01 100.0% 49.6%
3705469 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.56e-01 89.8% 86.3%
3488069 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.97e-01 99.0% 45.9%
3717097 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 45.0 2.87e-01 100.0% 38.2%
3710260 5.1.3.244 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BBS2_N, BBS2_Mid 0.50 44.0 3.04e-01 100.0% 41.9%
3619590 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.50 45.0 3.53e-01 100.0% 61.0%
3719720 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.50 44.0 2.91e-01 100.0% 67.8%
2722729 5.1.9.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain in ABC toxin B component 0.50 43.0 3.09e-01 99.0% 33.3%
D3 medium residues 223-311
PDB
Domain cluster: representative
CATH (75)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.89 84.0 6.73e-01 100.0% 57.2%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.87 63.0 5.87e-01 77.5% 62.0%
3zciA00 1.20.58.1660 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 72.0 5.48e-01 100.0% 41.4%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.83 49.0 5.36e-01 95.5% 70.7%
2p7vA00 1.20.120.1370 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 0.83 66.0 5.42e-01 83.1% 51.0%
6v9zA02 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.83 77.0 5.09e-01 100.0% 28.0%
3u0cA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.83 74.0 6.14e-01 97.8% 77.5%
7zdtD01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.82 75.0 5.03e-01 100.0% 27.3%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.82 61.0 6.70e-01 78.7% 97.2%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.82 59.0 4.85e-01 74.2% 43.7%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.82 47.0 4.14e-01 89.9% 41.1%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.82 71.0 7.17e-01 94.4% 100.0%
4mtxD00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.82 67.0 6.59e-01 87.6% 82.1%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.82 74.0 5.37e-01 100.0% 37.6%
4gzrB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.81 64.0 6.86e-01 86.5% 97.4%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.81 60.0 6.01e-01 83.1% 76.7%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 61.0 5.98e-01 79.8% 75.0%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.80 73.0 7.16e-01 100.0% 97.9%
7metA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.80 73.0 4.95e-01 100.0% 28.8%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 64.0 6.75e-01 84.3% 100.0%
7sgrA02 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.79 72.0 4.89e-01 100.0% 29.4%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.79 62.0 6.30e-01 82.0% 86.0%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 61.0 6.65e-01 83.1% 100.0%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.79 57.0 6.42e-01 77.5% 100.0%
3k29A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 71.0 5.84e-01 100.0% 80.1%
1yf2A02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.79 71.0 6.71e-01 100.0% 99.1%
1uruA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.79 67.0 5.07e-01 93.3% 73.7%
4q4hA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.78 71.0 4.78e-01 100.0% 28.3%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.78 54.0 5.35e-01 71.9% 67.4%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.78 61.0 6.52e-01 98.9% 97.3%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.78 53.0 5.18e-01 71.9% 63.9%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.78 64.0 6.68e-01 88.8% 100.0%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 60.0 6.53e-01 94.4% 100.0%
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 72.0 5.31e-01 100.0% 41.4%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 64.0 6.22e-01 98.9% 79.8%
4fzsA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.77 70.0 5.26e-01 100.0% 42.1%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 70.0 5.59e-01 100.0% 51.4%
6z01B03 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.77 50.0 4.14e-01 70.8% 38.3%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.77 62.0 5.42e-01 87.6% 59.4%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 56.0 6.16e-01 100.0% 100.0%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 60.0 6.42e-01 92.1% 100.0%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 55.0 6.10e-01 77.5% 100.0%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 59.0 6.26e-01 91.0% 96.1%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 64.0 6.18e-01 95.5% 84.0%
4cgkA01 6.10.250.3150 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.75 69.0 5.13e-01 100.0% 59.3%
3zdqA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.75 68.0 4.55e-01 100.0% 27.6%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 66.0 4.90e-01 100.0% 38.6%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.74 60.0 6.33e-01 92.1% 100.0%
2g38B00 1.20.1260.20 Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily 0.74 66.0 5.34e-01 100.0% 51.4%
6q45G01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.74 68.0 5.72e-01 100.0% 82.9%
6bl6B01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.74 67.0 4.54e-01 100.0% 40.2%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 58.0 5.49e-01 85.4% 71.4%
5y06A01 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 66.0 4.88e-01 100.0% 41.9%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.73 63.0 5.01e-01 93.3% 54.0%
2v0oB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.73 64.0 4.58e-01 98.9% 33.6%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.73 62.0 5.42e-01 93.3% 63.1%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.73 61.0 6.19e-01 94.4% 94.3%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.73 64.0 6.02e-01 98.9% 81.3%
3vbbE01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.72 65.0 5.87e-01 97.8% 78.2%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.72 62.0 6.01e-01 98.9% 84.2%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.72 62.0 5.31e-01 100.0% 58.5%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.71 58.0 5.00e-01 92.1% 56.0%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.71 58.0 5.72e-01 89.9% 100.0%
1jkvA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.71 58.0 4.45e-01 88.8% 74.6%
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.69 61.0 4.64e-01 100.0% 42.5%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.68 58.0 4.95e-01 96.6% 57.9%
2vs0A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 56.0 5.76e-01 93.3% 100.0%
3zbhA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 55.0 5.53e-01 94.4% 93.3%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.66 57.0 5.71e-01 98.9% 97.8%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.65 56.0 5.09e-01 98.9% 84.7%
3s84A02 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.64 53.0 4.42e-01 92.1% 51.0%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.63 51.0 5.25e-01 88.8% 94.1%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.62 45.0 4.05e-01 100.0% 53.5%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.62 53.0 3.89e-01 97.8% 40.1%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.62 49.0 4.99e-01 85.4% 90.6%
ECOD (94)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3592587 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.97 90.0 7.82e-01 100.0% 68.8%
5065057 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.90 81.0 6.60e-01 100.0% 54.8%
3615971 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.89 74.0 5.64e-01 100.0% 41.1%
3550436 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.89 68.0 6.41e-01 100.0% 68.3%
2722116 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.86 78.0 5.86e-01 96.6% 49.2%
3264065 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.86 73.0 7.68e-01 93.3% 100.0%
3743191 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.86 75.0 5.69e-01 100.0% 43.2%
3763454 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.86 79.0 7.07e-01 100.0% 92.5%
5020818 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.85 78.0 4.81e-01 100.0% 64.1%
3484694 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.85 79.0 5.22e-01 100.0% 52.4%
3484910 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.85 78.0 7.00e-01 100.0% 75.0%
4950969 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.83 77.0 4.76e-01 100.0% 19.6%
4576949 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.83 73.0 5.97e-01 100.0% 54.2%
3359919 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.82 63.0 5.88e-01 100.0% 66.7%
3934585 3755.3.1.465 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A 0.82 74.0 6.19e-01 100.0% 59.3%
4988623 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.82 76.0 5.25e-01 98.9% 100.0%
5016953 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.81 74.0 6.04e-01 100.0% 56.2%
3804937 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.81 74.0 6.03e-01 100.0% 61.3%
3544537 604.1.1.63 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 0.80 73.0 6.66e-01 98.9% 77.4%
4428739 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.80 74.0 5.18e-01 100.0% 33.6%
3739176 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.80 73.0 4.53e-01 100.0% 18.7%
5008718 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.80 72.0 4.53e-01 100.0% 23.3%
3164951 5094.1.1.1 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.80 68.0 5.43e-01 92.1% 65.3%
4978786 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 72.0 4.28e-01 100.0% 48.1%
3299419 5086.1.1.126 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PPI_helical 0.80 72.0 5.70e-01 100.0% 58.9%
3435096 192.29.1.216 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF632 0.80 73.0 6.55e-01 100.0% 76.7%
3842667 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.79 72.0 5.75e-01 100.0% 51.4%
3699098 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.79 67.0 7.01e-01 94.4% 100.0%
3408532 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.79 73.0 5.80e-01 100.0% 60.6%
4384750 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.79 69.0 6.81e-01 100.0% 89.5%
3576656 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.79 71.0 4.74e-01 100.0% 30.9%
3608199 1189.1.1.0 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.78 71.0 5.57e-01 100.0% 48.6%
4175684 3291.1.1.232 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Paralemmin 0.78 71.0 6.23e-01 100.0% 74.6%
4956566 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.78 70.0 7.15e-01 100.0% 100.0%
3215342 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.78 69.0 6.74e-01 100.0% 89.5%
4010998 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.78 70.0 5.61e-01 100.0% 62.3%
3733141 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.78 70.0 5.94e-01 100.0% 73.1%
3583684 148.1.3.11 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MT 0.78 72.0 5.00e-01 100.0% 34.4%
4016635 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.78 69.0 6.64e-01 96.6% 91.0%
1171038 3755.3.1.148 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CT398_CC 0.78 69.0 5.42e-01 100.0% 47.1%
3413926 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.78 71.0 4.98e-01 100.0% 34.0%
3671258 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.77 69.0 6.07e-01 98.9% 100.0%
4806319 3755.1.1.2 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › YscO-like 0.77 66.0 6.84e-01 95.5% 100.0%
3935140 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.77 69.0 5.51e-01 100.0% 78.9%
3713604 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.77 69.0 4.69e-01 100.0% 28.9%
4446057 192.8.1.345 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PF30463 0.77 70.0 5.26e-01 100.0% 41.8%
4936791 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.77 70.0 4.39e-01 100.0% 21.9%
4965923 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.77 69.0 5.40e-01 98.9% 47.6%
3953372 150.5.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.77 65.0 6.35e-01 94.4% 84.7%
4163282 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 69.0 5.41e-01 100.0% 49.2%
4576287 3755.3.1.471 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Paralemmin 0.76 68.0 5.68e-01 100.0% 57.4%
3613932 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.76 68.0 6.26e-01 100.0% 78.3%
5007978 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.76 68.0 5.93e-01 100.0% 65.9%
3216585 3291.1.1.172 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › KIF21A 0.76 67.0 5.68e-01 100.0% 59.3%
3224742 3755.3.1.9 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › SH3BP5 0.76 67.0 5.10e-01 100.0% 95.3%
3796836 3755.3.1.311 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › TTC3 0.76 69.0 4.48e-01 100.0% 24.3%
3996264 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.76 69.0 5.54e-01 100.0% 67.1%
4024105 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.76 68.0 4.78e-01 100.0% 44.0%
3767783 192.2.1.19 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › FAM186A-B_C 0.76 67.0 5.69e-01 100.0% 59.3%
3167235 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 69.0 5.61e-01 100.0% 62.5%
3852832 3922.1.1.72 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › FAM186A-B_C 0.76 67.0 5.68e-01 100.0% 59.3%
3207569 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 67.0 5.18e-01 100.0% 47.0%
3464261 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.75 69.0 5.50e-01 100.0% 52.4%
3825161 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 67.0 4.80e-01 100.0% 37.7%
3470739 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 67.0 5.04e-01 100.0% 41.4%
5009131 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 67.0 5.48e-01 100.0% 58.2%
4993050 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.75 66.0 5.07e-01 100.0% 88.6%
4937862 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.75 66.0 6.21e-01 98.9% 80.0%
3836427 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.75 65.0 6.29e-01 96.6% 90.0%
3864054 192.10.1.0 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.75 67.0 5.97e-01 100.0% 71.2%
3627942 3755.4.1.1 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 0.75 66.0 5.33e-01 100.0% 51.4%
3843241 108.1.1.25 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 0.74 67.0 4.80e-01 100.0% 34.6%
3559003 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.74 66.0 6.34e-01 100.0% 86.0%
4972214 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 69.0 4.24e-01 100.0% 32.5%
3712648 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.74 67.0 5.21e-01 100.0% 80.5%
3679787 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.74 64.0 4.55e-01 100.0% 31.9%
3788782 2004.1.1.199 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.74 66.0 4.07e-01 100.0% 17.7%
4017285 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 65.0 5.12e-01 100.0% 47.4%
3707204 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 65.0 4.56e-01 100.0% 31.5%
3917888 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.73 62.0 5.72e-01 94.4% 73.9%
5062884 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.72 66.0 4.96e-01 100.0% 44.3%
4479398 3755.1.1.8 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › FliJ 0.72 65.0 5.51e-01 100.0% 62.1%
4115372 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.72 60.0 5.60e-01 95.5% 73.6%
5073085 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.71 62.0 5.05e-01 95.5% 51.8%
3657123 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.71 62.0 6.14e-01 100.0% 90.5%
3932665 193.1.1.0 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like 0.70 62.0 4.47e-01 98.9% 34.6%
4041347 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.69 58.0 5.40e-01 93.3% 73.6%
4979981 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.69 58.0 5.46e-01 94.4% 74.5%
4983118 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.69 60.0 5.88e-01 97.8% 91.6%
3925849 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.69 60.0 4.56e-01 98.9% 40.5%
3630501 1075.4.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold 0.68 59.0 4.01e-01 100.0% 26.6%
4003222 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.66 56.0 5.46e-01 100.0% 85.0%
3245542 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 53.0 4.78e-01 86.5% 65.8%
3402327 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.65 57.0 4.70e-01 100.0% 52.9%