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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00055
Bact-VirJBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00055
Identity
- Kingdom:
- phage
Quality
82.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-74
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.74 | 54.0 | 5.17e-01 | 77.8% | 69.4% |
| 1vq8U00 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.72 | 49.0 | 4.97e-01 | 72.2% | 75.5% |
| 2iybE00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.69 | 54.0 | 5.13e-01 | 85.2% | 89.1% |
| 2vp7A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.67 | 50.0 | 4.74e-01 | 81.5% | 89.4% |
| 4jcjC02 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.67 | 50.0 | 4.95e-01 | 81.5% | 98.3% |
| 3mekA02 | 6.10.140.2220 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 46.0 | 4.76e-01 | 79.6% | 81.6% |
| 4zdtC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.65 | 53.0 | 4.91e-01 | 90.7% | 85.7% |
| 5y20A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.65 | 48.0 | 4.89e-01 | 79.6% | 100.0% |
| 4kfzA02 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.64 | 49.0 | 4.64e-01 | 83.3% | 87.7% |
| 4hi8B00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.64 | 51.0 | 4.63e-01 | 87.0% | 76.4% |
| 1x6aA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.62 | 49.0 | 4.70e-01 | 87.0% | 93.5% |
| 3vd6C01 | 3.30.50.10 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A | 0.61 | 41.0 | 4.48e-01 | 77.8% | 92.7% |
| 2xb1A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 51.0 | 4.30e-01 | 98.1% | 100.0% |
| 4qf3A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 45.0 | 4.51e-01 | 85.2% | 93.0% |
| 3t7lA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 46.0 | 4.17e-01 | 85.2% | 79.7% |
| 5d0iB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 47.0 | 4.80e-01 | 96.3% | 98.0% |
| 5d1kB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 47.0 | 4.26e-01 | 92.6% | 79.2% |
| 3gv4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 48.0 | 4.04e-01 | 98.1% | 58.6% |
| 3v43A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 46.0 | 3.74e-01 | 96.3% | 90.2% |
| 2uzgA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 46.0 | 3.95e-01 | 98.1% | 63.2% |
| 5tdrA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 37.0 | 3.53e-01 | 75.9% | 72.9% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3673150 | 377.1.1.33 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FLZ | 0.81 | 55.0 | 6.27e-01 | 75.9% | 100.0% |
| 3468657 | 377.1.1.33 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FLZ | 0.77 | 55.0 | 5.38e-01 | 75.9% | 68.3% |
| 4942722 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.76 | 53.0 | 4.63e-01 | 74.1% | 52.5% |
| 3361724 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.75 | 55.0 | 4.61e-01 | 77.8% | 47.8% |
| 4976002 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.75 | 50.0 | 5.51e-01 | 70.4% | 100.0% |
| 5007944 | 377.1.1.126 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Arc_trans_TRASH | 0.74 | 51.0 | 5.71e-01 | 74.1% | 97.5% |
| 5073214 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.73 | 49.0 | 4.54e-01 | 70.4% | 57.1% |
| 4929513 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 50.0 | 5.52e-01 | 79.6% | 100.0% |
| 4547414 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.72 | 49.0 | 5.27e-01 | 72.2% | 84.4% |
| 3400916 | 377.1.1.20 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Vps39_2 | 0.72 | 47.0 | 5.04e-01 | 72.2% | 80.0% |
| 3467671 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.72 | 49.0 | 5.43e-01 | 74.1% | 97.5% |
| 5010149 | 377.1.1.131 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TRASH_HVO_1752_C | 0.71 | 49.0 | 5.41e-01 | 74.1% | 100.0% |
| 3507545 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 54.0 | 4.87e-01 | 85.2% | 100.0% |
| 5059962 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 56.0 | 5.47e-01 | 92.6% | 81.0% |
| 3964732 | 377.1.1.119 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ATPase-cat_bd | 0.69 | 52.0 | 5.40e-01 | 83.3% | 90.0% |
| 3424334 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 51.0 | 5.49e-01 | 88.9% | 100.0% |
| 5009328 | 150.1.1.207 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF2175 | 0.67 | 49.0 | 3.99e-01 | 77.8% | 100.0% |
| 3704490 | 376.1.1.120 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Vps39_C | 0.67 | 54.0 | 5.54e-01 | 90.7% | 96.0% |
| 3818617 | 376.1.1.103 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 | 0.67 | 49.0 | 4.95e-01 | 79.6% | 90.9% |
| 5062265 | 377.1.1.86 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › C1_2 | 0.67 | 53.0 | 5.52e-01 | 92.6% | 94.0% |
| 3558133 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.67 | 49.0 | 4.61e-01 | 79.6% | 64.6% |
| 5020556 | 377.1.1.31 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS | 0.66 | 50.0 | 5.14e-01 | 83.3% | 92.0% |
| 5071881 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.66 | 54.0 | 5.30e-01 | 92.6% | 88.3% |
| 3221156 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.66 | 49.0 | 4.93e-01 | 83.3% | 87.3% |
| 3170592 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.65 | 47.0 | 4.51e-01 | 79.6% | 89.2% |
| 3669758 | 376.1.1.40 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 | 0.64 | 51.0 | 4.88e-01 | 90.7% | 92.3% |
| 3503755 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 52.0 | 5.06e-01 | 88.9% | 94.9% |
| 3391164 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 49.0 | 2.89e-01 | 85.2% | 13.2% |
| 3837543 | 2498.1.1.51 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DA1-like | 0.64 | 55.0 | 3.59e-01 | 98.1% | 50.8% |
| 3475334 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.64 | 45.0 | 4.93e-01 | 77.8% | 100.0% |
| 4359679 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.64 | 51.0 | 4.73e-01 | 90.7% | 91.4% |
| 3719758 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 46.0 | 4.45e-01 | 81.5% | 83.1% |
| 3595539 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 52.0 | 5.11e-01 | 96.3% | 88.3% |
| 4097669 | 377.1.1.48 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › SOBP | 0.63 | 47.0 | 4.85e-01 | 83.3% | 94.0% |
| 3606405 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.63 | 49.0 | 4.51e-01 | 90.7% | 74.7% |
| 3224677 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.62 | 49.0 | 4.76e-01 | 88.9% | 81.7% |
| 3573504 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.61 | 47.0 | 4.33e-01 | 88.9% | 68.0% |
| 3902090 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.61 | 48.0 | 4.92e-01 | 94.4% | 94.0% |
| 3597534 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.61 | 46.0 | 4.36e-01 | 83.3% | 90.8% |
| 3918190 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.61 | 46.0 | 3.63e-01 | 83.3% | 100.0% |
| 3611690 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.61 | 48.0 | 4.27e-01 | 88.9% | 71.2% |
| 4028097 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.60 | 48.0 | 4.49e-01 | 88.9% | 72.1% |
| 3601028 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.60 | 48.0 | 4.66e-01 | 90.7% | 88.3% |
| 3990940 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.59 | 46.0 | 4.22e-01 | 88.9% | 96.0% |
| 3494950 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 48.0 | 4.28e-01 | 92.6% | 93.8% |
| 3598893 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.59 | 43.0 | 4.18e-01 | 79.6% | 96.7% |
| 3308703 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.58 | 46.0 | 4.61e-01 | 88.9% | 89.1% |
| 3928741 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.58 | 49.0 | 4.28e-01 | 98.1% | 91.8% |
| 3645378 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.58 | 45.0 | 4.39e-01 | 87.0% | 83.3% |
| 3790267 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.58 | 47.0 | 4.27e-01 | 92.6% | 98.7% |
| 3417355 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.58 | 42.0 | 4.42e-01 | 79.6% | 100.0% |
| 3399231 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 45.0 | 4.17e-01 | 90.7% | 96.0% |
| 4026105 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 46.0 | 4.18e-01 | 96.3% | 98.8% |
| 3917462 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.55 | 46.0 | 4.00e-01 | 100.0% | 88.9% |
| 3538008 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.54 | 44.0 | 3.92e-01 | 100.0% | 88.9% |
| 3343337 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.54 | 44.0 | 3.93e-01 | 100.0% | 94.1% |
| 3658440 | 386.1.1.26 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 | 0.53 | 31.0 | 3.12e-01 | 74.1% | 54.5% |
| 3237486 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.53 | 42.0 | 4.04e-01 | 96.3% | 95.4% |
| 4000128 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.50 | 40.0 | 3.62e-01 | 98.1% | 96.5% |