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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00081

Bact-Vir

JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00081

Identity

Kingdom:
phage

Quality

90.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 68-183
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01145.32 best Band_7 46.8 4.60e-12 100.0% 55.4%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7vhqU01 3.30.479.30 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain 0.89 76.0 7.84e-01 98.3% 94.5%
1winA01 3.30.479.30 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain 0.86 79.0 7.95e-01 100.0% 96.6%
2rpbA00 3.30.479.30 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain 0.81 68.0 6.91e-01 100.0% 92.0%
2zuoA10 3.30.479.30 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain 0.79 73.0 7.42e-01 98.3% 99.1%
1a8rA02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.76 54.0 5.16e-01 100.0% 63.2%
4f8bA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.70 50.0 4.70e-01 100.0% 61.2%
3v9oA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.67 52.0 5.19e-01 100.0% 79.3%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.66 44.0 5.00e-01 71.6% 91.8%
4mb8D00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.61 54.0 4.04e-01 100.0% 39.3%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.59 28.0 3.35e-01 99.1% 66.2%
3toyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 39.0 3.85e-01 91.4% 63.8%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.57 29.0 3.35e-01 97.4% 66.7%
1kxpD04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 34.0 3.94e-01 82.8% 87.0%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.55 39.0 4.45e-01 81.9% 98.8%
3ik4B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 4.07e-01 100.0% 78.8%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 30.0 3.27e-01 73.3% 66.0%
3p3lA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 46.0 3.20e-01 100.0% 73.7%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.51 32.0 3.66e-01 77.6% 88.9%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3312228 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.95 85.0 7.95e-01 100.0% 79.3%
3944186 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.95 90.0 8.30e-01 100.0% 81.4%
3605179 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.94 84.0 7.28e-01 100.0% 64.8%
3599340 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.94 84.0 7.91e-01 100.0% 79.3%
4932838 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.94 82.0 8.09e-01 100.0% 86.7%
3271328 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.94 80.0 8.48e-01 100.0% 98.1%
4965684 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.93 90.0 8.46e-01 100.0% 91.9%
3523996 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.93 81.0 8.15e-01 100.0% 90.4%
5001545 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.93 81.0 7.59e-01 100.0% 77.0%
3959591 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.93 81.0 8.13e-01 100.0% 90.4%
3260338 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.93 80.0 7.79e-01 100.0% 83.2%
5058343 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.93 85.0 8.26e-01 100.0% 88.0%
3487126 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.92 82.0 7.69e-01 100.0% 79.3%
4956270 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.92 89.0 7.57e-01 100.0% 77.6%
3500570 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.92 79.0 7.14e-01 100.0% 69.3%
5054379 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.92 79.0 7.55e-01 100.0% 80.0%
3227676 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.91 79.0 6.93e-01 100.0% 65.0%
3602552 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.91 79.0 7.02e-01 100.0% 67.1%
4944483 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.91 79.0 7.53e-01 100.0% 80.0%
3732337 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.91 79.0 7.52e-01 100.0% 80.0%
3974085 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.91 79.0 7.79e-01 100.0% 86.7%
4977988 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.91 78.0 7.39e-01 100.0% 77.0%
3597939 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.91 79.0 7.55e-01 100.0% 80.8%
5069131 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.91 78.0 7.48e-01 100.0% 80.0%
3496975 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.91 78.0 7.48e-01 100.0% 80.0%
3253337 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.91 78.0 7.86e-01 100.0% 90.4%
4947843 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.91 84.0 8.15e-01 100.0% 89.6%
4927252 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.90 79.0 7.45e-01 100.0% 78.5%
4991921 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.90 77.0 6.73e-01 100.0% 63.0%
4447629 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.90 81.0 7.62e-01 100.0% 80.7%
3700069 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.90 78.0 7.85e-01 100.0% 91.3%
3883427 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.90 77.0 6.69e-01 100.0% 63.0%
3961248 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.90 86.0 7.44e-01 100.0% 72.7%
3968735 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.90 78.0 7.72e-01 90.5% 89.2%
4941790 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.90 77.0 7.20e-01 100.0% 75.0%
3237534 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.89 77.0 7.75e-01 100.0% 90.4%
3700023 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.89 77.0 7.67e-01 100.0% 87.5%
3795433 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.89 78.0 7.49e-01 100.0% 81.5%
4946531 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.89 82.0 7.99e-01 100.0% 89.6%
3970222 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.89 85.0 8.27e-01 100.0% 95.2%
3486227 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.89 81.0 7.36e-01 100.0% 74.7%
3289226 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.88 82.0 8.24e-01 100.0% 97.4%
5028381 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.88 78.0 7.41e-01 100.0% 80.0%
3355174 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.88 76.0 7.55e-01 100.0% 87.5%
3937096 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.88 77.0 7.62e-01 100.0% 88.3%
4649099 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.88 78.0 7.04e-01 100.0% 71.3%
3333427 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.88 76.0 6.43e-01 100.0% 58.3%
3614211 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.88 84.0 7.92e-01 100.0% 85.2%
4398398 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.88 85.0 7.42e-01 100.0% 77.5%
5050182 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.88 81.0 6.76e-01 100.0% 60.5%
3840749 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.88 75.0 7.56e-01 100.0% 90.4%
3998793 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.87 82.0 7.19e-01 100.0% 71.2%
3482847 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.87 82.0 7.95e-01 100.0% 91.2%
4944893 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.87 80.0 7.70e-01 100.0% 86.2%
4995673 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.87 74.0 7.35e-01 100.0% 86.7%
3386432 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.87 82.0 7.16e-01 100.0% 78.8%
4490995 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.87 81.0 5.99e-01 100.0% 43.0%
4681330 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.86 81.0 6.82e-01 98.3% 69.4%
3275852 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.86 83.0 7.36e-01 100.0% 90.3%
4267962 230.5.1.5 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › FloA 0.86 71.0 6.94e-01 100.0% 80.0%
3674868 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.86 82.0 7.21e-01 100.0% 76.2%
4670893 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.86 82.0 7.57e-01 100.0% 85.0%
4009220 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.86 82.0 5.65e-01 100.0% 35.4%
3799476 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.86 73.0 7.54e-01 94.0% 94.5%
5012808 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.85 78.0 7.07e-01 100.0% 74.7%
3976795 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.85 81.0 7.66e-01 100.0% 87.4%
3728098 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.85 81.0 7.31e-01 100.0% 86.7%
5010097 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.85 77.0 7.80e-01 100.0% 97.4%
4979692 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.85 81.0 7.72e-01 100.0% 89.2%
5059138 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.85 80.0 7.78e-01 100.0% 97.6%
5059432 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.84 77.0 7.61e-01 100.0% 93.3%
4946601 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.84 79.0 7.80e-01 100.0% 97.5%
3278458 230.5.1.4 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7_1 0.83 78.0 7.30e-01 100.0% 90.0%
4970323 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.83 78.0 7.57e-01 100.0% 92.8%
5058702 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.83 77.0 7.32e-01 100.0% 86.7%
5035388 230.5.1.4 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7_1 0.83 78.0 7.24e-01 100.0% 85.0%
4981034 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.82 77.0 7.44e-01 100.0% 93.8%
4960853 230.5.1.4 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7_1 0.82 77.0 7.18e-01 100.0% 87.9%
3971937 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.81 77.0 7.65e-01 100.0% 96.7%
3968703 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.81 76.0 7.20e-01 100.0% 86.7%
5060336 230.5.1.4 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7_1 0.81 73.0 6.92e-01 95.7% 87.4%
4025984 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.81 76.0 7.53e-01 100.0% 96.7%
3968121 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.81 76.0 6.73e-01 100.0% 94.4%
4996557 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.81 74.0 7.50e-01 100.0% 100.0%
3719141 230.5.1.2 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › MVP_shoulder 0.79 74.0 5.53e-01 100.0% 44.5%
3599357 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.79 72.0 7.16e-01 96.6% 100.0%
3531258 230.5.1.2 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › MVP_shoulder 0.78 72.0 6.83e-01 97.4% 92.6%
3595900 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.78 73.0 5.33e-01 100.0% 41.4%
3718698 230.5.1.2 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › MVP_shoulder 0.78 72.0 5.19e-01 98.3% 39.3%
5039135 230.6.1.1 a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.77 58.0 6.12e-01 99.1% 87.6%
3501639 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.77 68.0 6.54e-01 100.0% 84.6%
3781164 230.1.1.4 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB 0.62 52.0 5.15e-01 98.3% 86.7%
D2 medium residues 186-248
PDB
Domain cluster: representative