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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00084
Bact-VirJBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00084
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-88
Domain cluster:
rep: NC_041878.1__YP_009594951.1__FDG95_gp568__00411__D6-114
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6qm7J00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.71 | 64.0 | 4.78e-01 | 100.0% | 54.4% |
| 2ijrA01 | 3.30.70.1270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Api92-like domains | 0.71 | 62.0 | 5.93e-01 | 96.4% | 95.9% |
| 1s6lA02 | 3.15.10.60 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase | 0.69 | 47.0 | 4.05e-01 | 97.6% | 45.7% |
| 1rypD00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.69 | 62.0 | 4.44e-01 | 100.0% | 49.0% |
| 1e8oA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.67 | 32.0 | 3.43e-01 | 91.7% | 51.4% |
| 3f79E00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.65 | 58.0 | 4.23e-01 | 100.0% | 49.6% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 31.0 | 3.49e-01 | 91.7% | 58.5% |
| 2nyhA00 | 3.30.70.1240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › DOPA-like domains | 0.64 | 53.0 | 4.83e-01 | 92.9% | 84.5% |
| 3p54A02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.64 | 34.0 | 3.65e-01 | 97.6% | 59.2% |
| 4makB00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 52.0 | 5.43e-01 | 92.9% | 100.0% |
| 5f1mA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.63 | 55.0 | 3.97e-01 | 100.0% | 59.1% |
| 8hi1E01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 54.0 | 5.42e-01 | 98.8% | 97.7% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 31.0 | 3.43e-01 | 92.9% | 59.4% |
| 4g2sA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.61 | 46.0 | 4.26e-01 | 100.0% | 63.2% |
| 1txoB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 52.0 | 3.86e-01 | 100.0% | 61.9% |
| 3f2gA00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.59 | 46.0 | 3.50e-01 | 84.5% | 52.2% |
| 1nijA02 | 3.30.1220.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Yjia; Chain: A;domain 2 › CobW-like, C-terminal domain | 0.56 | 48.0 | 4.38e-01 | 96.4% | 71.6% |
| 3os6C00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.54 | 44.0 | 2.88e-01 | 88.1% | 38.1% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.53 | 40.0 | 3.74e-01 | 88.1% | 64.8% |
| 2nykA01 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.51 | 46.0 | 3.82e-01 | 100.0% | 73.0% |
| 1914A00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.51 | 47.0 | 3.66e-01 | 100.0% | 70.8% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.50 | 46.0 | 3.69e-01 | 100.0% | 66.5% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3986751 | 3197.1.1.0 ↗ | a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 | 0.75 | 38.0 | 3.46e-01 | 98.8% | 38.2% |
| 3277842 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.70 | 48.0 | 5.46e-01 | 95.2% | 98.3% |
| 5018 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.69 | 47.0 | 5.41e-01 | 96.4% | 100.0% |
| 4464688 | 884.1.1.1 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C | 0.69 | 48.0 | 4.69e-01 | 91.7% | 66.0% |
| 3923911 | 896.1.1.3 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 | 0.68 | 33.0 | 3.47e-01 | 91.7% | 50.7% |
| 3282845 | 304.8.1.26 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3145 | 0.68 | 59.0 | 4.94e-01 | 100.0% | 68.0% |
| 4974741 | 304.125.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins | 0.67 | 57.0 | 5.74e-01 | 94.0% | 100.0% |
| 3953844 | 304.24.1.34 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF3145 | 0.67 | 58.0 | 4.92e-01 | 100.0% | 71.0% |
| 4032585 | 884.1.1.1 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C | 0.66 | 45.0 | 4.58e-01 | 89.3% | 70.6% |
| 3398591 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.65 | 59.0 | 3.86e-01 | 100.0% | 23.8% |
| 2098117 | 304.56.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › Cas_Cas2CT1978 | 0.60 | 53.0 | 5.16e-01 | 100.0% | 90.5% |
| 4048866 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.59 | 50.0 | 4.17e-01 | 94.0% | 84.0% |
| 4018977 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 37.0 | 3.23e-01 | 100.0% | 42.4% |
| 4644945 | 246.1.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase | 0.57 | 48.0 | 3.51e-01 | 91.7% | 59.8% |
| 3892746 | 5.1.4.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP | 0.51 | 46.0 | 2.95e-01 | 98.8% | 29.7% |
| 3777589 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 41.0 | 2.68e-01 | 90.5% | 59.8% |
| 5033931 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 43.0 | 2.90e-01 | 96.4% | 95.7% |
| 1162187 | 233.1.1.8 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157_N_1 | 0.50 | 46.0 | 3.56e-01 | 100.0% | 59.3% |
| 4529966 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 42.0 | 2.89e-01 | 96.4% | 96.4% |