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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00089

Bact-Vir

JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00089

Identity

Kingdom:
phage

Quality

83.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-100
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5e37A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.72 45.0 4.83e-01 83.8% 73.3%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 39.0 3.78e-01 96.0% 52.3%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.66 46.0 4.57e-01 71.7% 69.6%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.62 30.0 3.72e-01 96.0% 72.3%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.59 37.0 4.22e-01 87.9% 87.1%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.59 37.0 4.10e-01 74.7% 79.7%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 38.0 4.11e-01 84.8% 80.5%
3sooA01 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.57 27.0 3.08e-01 74.7% 58.0%
4bpe700 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.93e-01 75.8% 81.2%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 34.0 3.67e-01 72.7% 75.0%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.82e-01 75.8% 87.5%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 36.0 3.57e-01 96.0% 67.0%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.51 36.0 3.67e-01 79.8% 72.3%
2oqgB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 4.12e-01 89.9% 81.5%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 35.0 3.70e-01 73.7% 86.7%
4qmfD02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.50 33.0 3.47e-01 94.9% 73.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3270487 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 38.0 3.68e-01 96.0% 51.8%
3594965 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 37.0 3.30e-01 96.0% 41.4%
3603007 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.62 34.0 3.87e-01 73.7% 70.7%
4931502 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 36.0 3.82e-01 71.7% 66.7%
4232234 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.56 46.0 3.76e-01 89.9% 81.1%
3285369 109.4.1.2998 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF25872 0.55 42.0 2.79e-01 88.9% 17.6%
4168969 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.55 45.0 3.29e-01 90.9% 53.4%
4973726 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.87e-01 83.8% 66.1%
3604130 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 36.0 3.86e-01 80.8% 77.6%
5079762 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 35.0 3.74e-01 71.7% 74.1%
4533897 101.1.2.508 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25872 0.54 42.0 3.76e-01 93.9% 56.7%
5033726 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.54 48.0 4.78e-01 97.0% 94.0%
5053351 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.82e-01 72.7% 86.3%
5028061 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 36.0 3.79e-01 96.0% 76.7%
4138939 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 33.0 3.57e-01 75.8% 76.2%
4364892 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.52 43.0 3.19e-01 92.9% 53.6%
5061659 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 30.0 3.34e-01 71.7% 72.0%
3290009 4107.1.1.1 ↗ alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.52 34.0 2.85e-01 85.9% 38.2%
5065568 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 4.14e-01 99.0% 89.2%
4310372 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.52 42.0 3.56e-01 92.9% 82.7%
4974684 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.74e-01 76.8% 75.0%
5057057 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.51 38.0 3.95e-01 77.8% 97.8%
4626742 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.51 36.0 3.96e-01 71.7% 97.3%
143631 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.51 38.0 3.43e-01 81.8% 91.1%