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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00112
Bact-VirJBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00112
Identity
- Kingdom:
- phage
Quality
79.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-66
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rc2A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.64 | 38.0 | 2.71e-01 | 71.9% | 20.5% |
| 4g6tB00 | 6.10.20.120 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.63 | 38.0 | 3.72e-01 | 100.0% | 56.3% |
| 4mbsA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.61 | 43.0 | 2.74e-01 | 75.0% | 26.6% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 45.0 | 3.41e-01 | 76.6% | 48.6% |
| 2memA00 | 3.90.1150.190 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › SLED domain | 0.61 | 44.0 | 3.67e-01 | 78.1% | 68.1% |
| 3flkA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.58 | 42.0 | 2.68e-01 | 79.7% | 89.7% |
| 4h0oA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 51.0 | 3.68e-01 | 100.0% | 61.2% |
| 1g8mA02 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.57 | 45.0 | 3.41e-01 | 92.2% | 57.4% |
| 1ckeA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 41.0 | 2.86e-01 | 76.6% | 78.3% |
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.56 | 40.0 | 3.50e-01 | 76.6% | 64.9% |
| 3oduB01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 45.0 | 3.02e-01 | 93.8% | 59.2% |
| 3mfqA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.53 | 38.0 | 3.05e-01 | 78.1% | 91.5% |
| 3pf7B00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.51 | 42.0 | 2.60e-01 | 95.3% | 85.3% |
| 2xrfC00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.50 | 43.0 | 2.81e-01 | 95.3% | 81.5% |
| 1b8pA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.50 | 44.0 | 3.27e-01 | 100.0% | 91.9% |
| 2ph7A01 | 1.10.3400.10 | Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like | 0.50 | 36.0 | 3.01e-01 | 96.9% | 40.3% |
| 8eg0B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 39.0 | 2.54e-01 | 89.1% | 95.1% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.50 | 43.0 | 3.17e-01 | 93.8% | 55.1% |
| 5ucoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 37.0 | 2.85e-01 | 79.7% | 36.6% |
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 37.0 | 3.01e-01 | 78.1% | 67.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3623273 | 101.1.2.712 ↗ | alpha arrays › HTH › HTH › winged helix domain › FNIP_C | 0.71 | 52.0 | 3.40e-01 | 78.1% | 72.0% |
| 4934604 | 2003.1.1.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA | 0.65 | 56.0 | 3.63e-01 | 100.0% | 94.9% |
| 3907411 | 5001.1.1.111 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw | 0.63 | 46.0 | 2.90e-01 | 76.6% | 67.6% |
| 3920672 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.62 | 40.0 | 3.53e-01 | 81.2% | 46.7% |
| 4026684 | 192.20.1.7 ↗ | alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26729 | 0.61 | 44.0 | 3.65e-01 | 95.3% | 45.7% |
| 2106287 | 3715.1.1.1 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e | 0.57 | 40.0 | 3.52e-01 | 75.0% | 68.0% |
| 3252643 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.57 | 47.0 | 3.51e-01 | 95.3% | 68.0% |
| 3570970 | 220.1.1.36 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 | 0.56 | 43.0 | 3.09e-01 | 85.9% | 29.0% |
| 3636048 | 101.1.8.10 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 | 0.56 | 40.0 | 2.98e-01 | 78.1% | 91.4% |
| 5082053 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 44.0 | 3.00e-01 | 92.2% | 41.5% |
| 3960319 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.55 | 37.0 | 2.82e-01 | 70.3% | 72.9% |
| 3999359 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 45.0 | 3.68e-01 | 95.3% | 50.4% |
| 5065366 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.54 | 41.0 | 3.44e-01 | 84.4% | 100.0% |
| 3890723 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 46.0 | 3.07e-01 | 96.9% | 82.7% |
| 3581101 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.53 | 43.0 | 3.26e-01 | 93.8% | 36.5% |
| 3649366 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 38.0 | 3.53e-01 | 81.2% | 58.8% |
| 3492714 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.52 | 44.0 | 3.20e-01 | 93.8% | 37.2% |
| 3586391 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.51 | 39.0 | 2.57e-01 | 84.4% | 57.4% |
| 4970952 | 3715.1.1.1 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e | 0.51 | 37.0 | 3.38e-01 | 76.6% | 62.4% |
| 5050501 | 3715.1.1.1 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e | 0.50 | 38.0 | 3.34e-01 | 81.2% | 56.8% |
D2
high
residues 107-172
Domain cluster:
rep: MK448917.1__QBX27012.1__Javan362_0038__00020__D93-151