←Back to structures
JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00180
Bact-VirJBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00180
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-53_134-155
D2
medium
residues 54-133
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pwwA00 | 3.30.310.100 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like | 0.69 | 46.0 | 4.10e-01 | 78.8% | 48.7% |
| 3ek7A01 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.68 | 52.0 | 3.67e-01 | 82.5% | 74.5% |
| 3mazA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.67 | 48.0 | 4.53e-01 | 90.0% | 61.6% |
| 3bcyA00 | 3.40.1000.40 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 | 0.65 | 41.0 | 3.45e-01 | 80.0% | 35.6% |
| 3k2tA01 | 3.30.505.50 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain | 0.63 | 36.0 | 4.49e-01 | 71.2% | 100.0% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.62 | 48.0 | 4.81e-01 | 98.8% | 79.8% |
| 2w4yA00 | 2.40.160.220 | Mainly Beta › Beta Barrel › Porin › | 0.61 | 49.0 | 4.35e-01 | 97.5% | 59.0% |
| 1dhnA00 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.59 | 45.0 | 3.86e-01 | 80.0% | 96.7% |
| 4ccvA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 53.0 | 4.68e-01 | 100.0% | 87.0% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 48.0 | 3.90e-01 | 100.0% | 47.4% |
| 3we5A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.58 | 41.0 | 3.43e-01 | 77.5% | 41.8% |
| 3fsdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 42.0 | 3.67e-01 | 77.5% | 51.2% |
| 1pp0B00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.58 | 51.0 | 3.86e-01 | 100.0% | 79.4% |
| 3soyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 43.0 | 3.52e-01 | 80.0% | 44.4% |
| 1twfB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.57 | 42.0 | 3.59e-01 | 76.2% | 100.0% |
| 2gnxA02 | 3.30.450.240 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 42.0 | 3.75e-01 | 91.3% | 56.9% |
| 2pmzB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.57 | 40.0 | 3.49e-01 | 75.0% | 100.0% |
| 1svbA01 | 2.60.98.10 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 | 0.56 | 51.0 | 4.25e-01 | 100.0% | 69.1% |
| 1kiaA01 | 3.30.46.10 | Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 | 0.56 | 43.0 | 4.27e-01 | 86.3% | 80.7% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.56 | 51.0 | 4.07e-01 | 100.0% | 56.1% |
| 6ihjC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 48.0 | 3.83e-01 | 97.5% | 94.6% |
| 1luiA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 46.0 | 4.26e-01 | 95.0% | 90.7% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 43.0 | 3.36e-01 | 83.7% | 40.6% |
| 2r4iA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 37.0 | 3.28e-01 | 80.0% | 45.5% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 43.0 | 3.66e-01 | 85.0% | 81.8% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 37.0 | 3.82e-01 | 76.2% | 75.7% |
| 2i99A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.54 | 49.0 | 3.97e-01 | 100.0% | 60.0% |
| 2z6oA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 41.0 | 3.27e-01 | 81.2% | 67.5% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.54 | 40.0 | 3.72e-01 | 78.8% | 68.6% |
| 3zh5A00 | 2.40.128.710 | Mainly Beta › Beta Barrel › Lipocalin › Surface-adhesin protein E | 0.53 | 44.0 | 3.77e-01 | 92.5% | 57.6% |
| 3c8dA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.12e-01 | 71.2% | 55.4% |
| 3natA01 | 3.40.50.11250 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 | 0.53 | 38.0 | 3.16e-01 | 76.2% | 72.1% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.51 | 37.0 | 3.41e-01 | 75.0% | 70.2% |
| 3t91B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.51 | 41.0 | 2.98e-01 | 86.3% | 47.9% |
| 1rerA01 | 2.60.98.10 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 | 0.50 | 43.0 | 3.76e-01 | 97.5% | 65.9% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4563194 | 274.1.1.40 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › 17kDa_Anti_2 | 0.69 | 57.0 | 5.44e-01 | 100.0% | 75.5% |
| 3272765 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.69 | 47.0 | 4.47e-01 | 77.5% | 60.0% |
| 4029709 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.67 | 46.0 | 3.96e-01 | 77.5% | 44.8% |
| 3177804 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.67 | 49.0 | 3.92e-01 | 86.3% | 38.7% |
| 3707878 | 5.1.2.33 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 | 0.66 | 48.0 | 3.35e-01 | 78.8% | 28.6% |
| 3192104 | 3385.1.1.0 ↗ | beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 | 0.65 | 57.0 | 4.95e-01 | 98.8% | 72.0% |
| 3650186 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.64 | 49.0 | 3.04e-01 | 81.2% | 22.5% |
| 3651800 | 71.1.1.12 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 | 0.64 | 56.0 | 4.66e-01 | 100.0% | 70.3% |
| 3990957 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.62 | 45.0 | 3.81e-01 | 80.0% | 45.2% |
| 3683559 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.62 | 46.0 | 3.35e-01 | 78.8% | 31.4% |
| 4940924 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 39.0 | 3.88e-01 | 76.2% | 61.2% |
| 3663259 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.61 | 45.0 | 3.79e-01 | 80.0% | 46.7% |
| 3824181 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.60 | 43.0 | 4.81e-01 | 80.0% | 100.0% |
| 3399255 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.60 | 41.0 | 3.66e-01 | 80.0% | 49.6% |
| 3606641 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 46.0 | 4.16e-01 | 83.7% | 79.1% |
| 3460513 | 10.1.1.26 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C | 0.59 | 53.0 | 3.88e-01 | 100.0% | 52.6% |
| 2938507 | 9.2.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg | 0.59 | 45.0 | 3.93e-01 | 82.5% | 55.2% |
| 2659065 | 265.1.1.3 ↗ | a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › AP205_coat | 0.59 | 52.0 | 4.80e-01 | 98.8% | 81.2% |
| 3800723 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.58 | 43.0 | 3.14e-01 | 81.2% | 28.4% |
| 3681742 | 220.1.1.182 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › RDR6_2nd | 0.58 | 51.0 | 4.07e-01 | 100.0% | 63.0% |
| 3515333 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 42.0 | 4.12e-01 | 78.8% | 70.0% |
| 3689727 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.57 | 47.0 | 3.01e-01 | 98.8% | 17.8% |
| 3934735 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 50.0 | 4.64e-01 | 98.8% | 99.0% |
| 4951664 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 42.0 | 3.47e-01 | 80.0% | 50.0% |
| 3926039 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 49.0 | 4.60e-01 | 97.5% | 98.0% |
| 3783089 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.55 | 48.0 | 4.22e-01 | 97.5% | 78.3% |
| 4963276 | 283.2.1.21 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › DUF7286 | 0.55 | 48.0 | 3.84e-01 | 97.5% | 82.5% |
| 3514245 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 47.0 | 4.15e-01 | 98.8% | 89.6% |
| 5036266 | 5.1.2.7 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 | 0.52 | 41.0 | 2.75e-01 | 87.5% | 74.7% |
| 3395269 | 5.1.3.147 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 | 0.52 | 47.0 | 2.99e-01 | 100.0% | 80.7% |
| 4246290 | 5.1.4.251 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › choice_anch_I | 0.52 | 42.0 | 2.60e-01 | 90.0% | 28.5% |
| 5057039 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 38.0 | 3.89e-01 | 88.7% | 82.1% |