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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00198
Bact-VirJBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00198
Identity
- Kingdom:
- phage
Quality
90.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-99
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18066.7 best | Phage_ABA_S | 41.8 | 1.90e-10 | 91.6% | 98.9% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.69 | 46.0 | 5.22e-01 | 93.7% | 90.1% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.68 | 45.0 | 4.49e-01 | 100.0% | 66.0% |
| 1t4lB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.67 | 47.0 | 4.88e-01 | 98.9% | 77.8% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 45.0 | 4.59e-01 | 100.0% | 75.8% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 43.0 | 4.86e-01 | 94.7% | 93.0% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 42.0 | 4.76e-01 | 94.7% | 97.1% |
| 1uhzA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 43.0 | 4.41e-01 | 97.9% | 77.5% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.58 | 40.0 | 4.13e-01 | 70.5% | 90.9% |
| 3qv2A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 44.0 | 3.40e-01 | 82.1% | 42.5% |
| 2q7eA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 44.0 | 3.48e-01 | 92.6% | 84.4% |
| 3evzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 36.0 | 3.03e-01 | 72.6% | 44.6% |
| 3l4gC04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 42.0 | 3.18e-01 | 93.7% | 86.5% |
| 4ft4A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 40.0 | 2.69e-01 | 83.2% | 39.0% |
| 1jkmA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 40.0 | 2.75e-01 | 84.2% | 93.0% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.51 | 39.0 | 2.90e-01 | 82.1% | 91.3% |
| 2j3rB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.51 | 38.0 | 3.32e-01 | 83.2% | 74.5% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3961733 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.76 | 56.0 | 5.83e-01 | 76.8% | 83.3% |
| 4106397 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.75 | 52.0 | 5.83e-01 | 83.2% | 90.7% |
| 3933100 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.73 | 50.0 | 5.78e-01 | 70.5% | 95.7% |
| 3436093 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.72 | 51.0 | 5.69e-01 | 73.7% | 96.0% |
| 3516145 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.72 | 56.0 | 6.11e-01 | 84.2% | 97.5% |
| 4012540 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.71 | 46.0 | 5.13e-01 | 92.6% | 84.0% |
| 4026643 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.70 | 48.0 | 5.14e-01 | 95.8% | 80.0% |
| 3370322 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.70 | 49.0 | 5.10e-01 | 100.0% | 77.8% |
| 3515207 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.70 | 48.0 | 4.93e-01 | 97.9% | 74.4% |
| 3408937 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.70 | 49.0 | 5.28e-01 | 77.9% | 86.3% |
| 3730099 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.69 | 49.0 | 5.50e-01 | 100.0% | 94.6% |
| 3329783 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.69 | 51.0 | 5.16e-01 | 82.1% | 77.9% |
| 3710326 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.68 | 49.0 | 5.14e-01 | 74.7% | 96.5% |
| 4040354 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.68 | 48.0 | 5.32e-01 | 72.6% | 98.7% |
| 3938972 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.68 | 46.0 | 5.14e-01 | 97.9% | 88.0% |
| 3670595 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.68 | 49.0 | 4.98e-01 | 78.9% | 75.8% |
| 3911301 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.68 | 44.0 | 4.60e-01 | 95.8% | 72.9% |
| 3611339 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.67 | 45.0 | 4.80e-01 | 88.4% | 77.6% |
| 4043415 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 48.0 | 3.04e-01 | 74.7% | 15.7% |
| 3925738 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.67 | 53.0 | 5.02e-01 | 84.2% | 86.4% |
| 2987309 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.66 | 47.0 | 5.18e-01 | 73.7% | 100.0% |
| 4935879 | 330.10.1.1 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO | 0.65 | 49.0 | 5.03e-01 | 80.0% | 92.2% |
| 3390564 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 46.0 | 4.45e-01 | 88.4% | 65.7% |
| 4608418 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.65 | 52.0 | 5.49e-01 | 91.6% | 96.5% |
| 3481273 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 53.0 | 5.16e-01 | 89.5% | 80.0% |
| 3931156 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 41.0 | 4.69e-01 | 88.4% | 88.6% |
| 3209694 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 50.0 | 4.93e-01 | 88.4% | 80.0% |
| 4080057 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.63 | 44.0 | 4.60e-01 | 95.8% | 80.0% |
| 4632126 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.62 | 48.0 | 4.94e-01 | 100.0% | 87.8% |
| 3707314 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 48.0 | 5.10e-01 | 91.6% | 92.9% |
| 3846927 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 45.0 | 4.52e-01 | 90.5% | 75.8% |
| 3610972 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.62 | 47.0 | 4.22e-01 | 100.0% | 58.5% |
| 3519114 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 52.0 | 4.97e-01 | 93.7% | 79.1% |
| 3739414 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.61 | 53.0 | 5.18e-01 | 100.0% | 86.7% |
| 3596829 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 46.0 | 4.34e-01 | 97.9% | 66.1% |
| 3797649 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 48.0 | 4.62e-01 | 87.4% | 77.3% |
| 4421418 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.57 | 50.0 | 4.78e-01 | 100.0% | 82.6% |
| 3780194 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 47.0 | 3.43e-01 | 100.0% | 34.3% |
| 4609098 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.56 | 50.0 | 4.45e-01 | 98.9% | 83.0% |
| 4391625 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.56 | 50.0 | 4.83e-01 | 100.0% | 96.4% |
| 4971745 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.56 | 41.0 | 3.77e-01 | 78.9% | 90.6% |
| 3223921 | 2484.1.1.259 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26742 | 0.56 | 40.0 | 4.10e-01 | 89.5% | 78.9% |
| 4679671 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.55 | 50.0 | 4.68e-01 | 100.0% | 93.2% |
| 3835039 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.55 | 49.0 | 4.53e-01 | 100.0% | 79.2% |
| 3965319 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.55 | 50.0 | 4.68e-01 | 100.0% | 91.3% |
| 4579550 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.55 | 49.0 | 4.40e-01 | 98.9% | 86.2% |
| 3598139 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 47.0 | 4.06e-01 | 100.0% | 60.7% |
| 3959068 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.54 | 41.0 | 3.62e-01 | 80.0% | 75.0% |
| 3592295 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 48.0 | 4.04e-01 | 100.0% | 62.5% |
| 4360324 | 3398.1.1.2 ↗ | a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › prok_STING | 0.52 | 46.0 | 3.87e-01 | 97.9% | 74.4% |
| 4616359 | 7506.1.1.1 ↗ | a/b three-layered sandwiches › N-terminal domain of GerK3 germinant receptor › N-terminal domain of GerK3 germinant receptor › N-terminal domain of GerK3 germinant receptor › GerA | 0.51 | 44.0 | 3.86e-01 | 100.0% | 88.6% |