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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00217
Bact-VirJBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00217
Identity
- Kingdom:
- phage
Quality
80.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-89
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05814.17 best | Ac76 | 24.7 | 2.60e-05 | 73.6% | 67.5% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.74 | 56.0 | 5.68e-01 | 81.6% | 80.5% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.74 | 58.0 | 5.54e-01 | 85.1% | 73.0% |
| 6q45G01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.73 | 56.0 | 4.65e-01 | 80.5% | 58.2% |
| 5dn6J00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.73 | 56.0 | 5.98e-01 | 82.8% | 95.9% |
| 2uv8A07 | 6.10.140.1410 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 60.0 | 6.05e-01 | 89.7% | 95.3% |
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 43.0 | 4.17e-01 | 72.4% | 59.8% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.66 | 54.0 | 5.48e-01 | 93.1% | 100.0% |
| 1vw4T01 | 6.10.330.20 | Special › Helix non-globular › Monooxygenase › | 0.65 | 48.0 | 4.40e-01 | 82.8% | 59.8% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 50.0 | 4.83e-01 | 80.5% | 88.5% |
| 3qa8A04 | 1.20.1270.250 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.65 | 53.0 | 3.87e-01 | 88.5% | 75.5% |
| 4dlqA02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 44.0 | 4.28e-01 | 70.1% | 64.2% |
| 2hydA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.64 | 54.0 | 3.79e-01 | 100.0% | 30.3% |
| 2ewfA02 | 1.20.1270.310 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.63 | 40.0 | 4.17e-01 | 72.4% | 69.1% |
| 1gpjA03 | 1.10.1200.70 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glutamyl tRNA-reductase dimerization domain | 0.62 | 43.0 | 4.40e-01 | 71.3% | 76.5% |
| 2gd5A00 | 6.10.140.1230 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 53.0 | 4.57e-01 | 97.7% | 89.4% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.60 | 34.0 | 3.72e-01 | 74.7% | 66.7% |
| 3fb2A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 42.0 | 4.03e-01 | 75.9% | 65.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5048512 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.83 | 64.0 | 6.21e-01 | 80.5% | 82.1% |
| 3548194 | 192.2.1.18 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING | 0.78 | 60.0 | 5.47e-01 | 80.5% | 67.3% |
| 3284621 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.76 | 58.0 | 5.95e-01 | 81.6% | 83.5% |
| 3264853 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.75 | 70.0 | 5.94e-01 | 100.0% | 66.7% |
| 4625812 | 2006.1.4.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 | 0.75 | 68.0 | 4.92e-01 | 100.0% | 48.8% |
| None | — | 0.75 | 60.0 | 4.32e-01 | 87.4% | 32.2% | |
| 5019837 | 2003.1.1.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH | 0.75 | 60.0 | 4.32e-01 | 87.4% | 32.2% |
| 4127216 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.75 | 60.0 | 5.52e-01 | 87.4% | 71.3% |
| 3918068 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.72 | 55.0 | 4.98e-01 | 83.9% | 60.9% |
| 3196820 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.71 | 50.0 | 3.23e-01 | 73.6% | 17.8% |
| 3992063 | 601.1.2.79 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › TMEM126_like | 0.70 | 58.0 | 4.35e-01 | 94.3% | 37.1% |
| 3582573 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.70 | 50.0 | 4.56e-01 | 73.6% | 85.5% |
| 3785344 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.67 | 58.0 | 5.29e-01 | 98.9% | 80.0% |
| 4632254 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.66 | 51.0 | 4.79e-01 | 83.9% | 72.7% |
| 3997412 | 3755.4.1.41 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › CDK5RAP3 | 0.63 | 47.0 | 3.44e-01 | 80.5% | 34.8% |
| 4545543 | 517.2.1.1 ↗ | beta barrels › CBF-like › TraF › TraF › TrbI | 0.63 | 47.0 | 3.66e-01 | 81.6% | 54.7% |
| 3596737 | 604.8.1.0 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo | 0.61 | 47.0 | 4.09e-01 | 81.6% | 60.0% |
| 4666571 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.60 | 45.0 | 4.69e-01 | 80.5% | 97.5% |
| 3596744 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.60 | 52.0 | 5.33e-01 | 100.0% | 97.6% |
| 3273862 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.59 | 55.0 | 5.32e-01 | 98.9% | 93.7% |
| 3483188 | 605.2.1.7 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › BBS2_hp | 0.57 | 52.0 | 5.26e-01 | 98.9% | 98.8% |
| 3941389 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 41.0 | 3.53e-01 | 77.0% | 50.0% |
| 3484742 | 3922.1.1.197 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › BBS2_hp | 0.56 | 51.0 | 5.17e-01 | 98.9% | 98.8% |
| 4973816 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.56 | 46.0 | 3.87e-01 | 89.7% | 67.6% |
| 5074223 | 622.5.1.0 ↗ | alpha bundles › YvfG-like › Probable 26S proteasome regulatory subunit p27 › Probable 26S proteasome regulatory subunit p27 | 0.54 | 42.0 | 4.15e-01 | 83.9% | 88.9% |
| 3933048 | 4992.1.1.12 ↗ | extended segments › RelB-like › RelB-like › RelB-like › LIN9_C | 0.51 | 46.0 | 4.44e-01 | 100.0% | 86.0% |
| 3491886 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.50 | 41.0 | 4.36e-01 | 98.9% | 100.0% |
D2
high
residues 92-181
Domain cluster:
rep: MK893987.1__QDF14342.1__X__00045__D37-102
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6jy5B00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.53 | 40.0 | 4.18e-01 | 98.9% | 91.5% |
| 7k98B01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 45.0 | 4.19e-01 | 97.8% | 81.6% |
| 1gd5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 41.0 | 3.70e-01 | 91.1% | 96.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3247265 | 2.1.1.105 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB | 0.57 | 51.0 | 4.30e-01 | 100.0% | 65.3% |
| 3959123 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.56 | 46.0 | 4.36e-01 | 97.8% | 75.2% |
| 5076829 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.55 | 45.0 | 4.66e-01 | 100.0% | 97.6% |
| 5024446 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.55 | 44.0 | 4.48e-01 | 96.7% | 88.9% |
| 4968816 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.55 | 43.0 | 4.23e-01 | 97.8% | 81.1% |
| 3548072 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.54 | 42.0 | 3.59e-01 | 97.8% | 50.7% |
| 4935709 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.54 | 43.0 | 4.14e-01 | 100.0% | 76.2% |
| 5067186 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.53 | 43.0 | 4.28e-01 | 100.0% | 84.2% |
| 3513137 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 42.0 | 4.03e-01 | 100.0% | 72.7% |
| 3976838 | 2.1.1.295 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › YqiJ_OB | 0.53 | 38.0 | 4.01e-01 | 100.0% | 85.0% |
| 4948716 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 42.0 | 4.40e-01 | 98.9% | 100.0% |
| 5037256 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.52 | 41.0 | 4.17e-01 | 97.8% | 88.9% |
| 3963716 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 44.0 | 4.21e-01 | 100.0% | 85.5% |