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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00236
Bact-VirJBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00236
Identity
- Kingdom:
- phage
Quality
82.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-65
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l0oC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 46.0 | 4.57e-01 | 77.8% | 77.2% |
| 2xi9A03 | 1.10.150.480 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.64 | 47.0 | 3.88e-01 | 100.0% | 43.6% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 45.0 | 3.55e-01 | 100.0% | 41.1% |
| 6e5bN00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 46.0 | 3.17e-01 | 90.7% | 64.3% |
| 4etsA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 49.0 | 4.22e-01 | 100.0% | 62.1% |
| 6qm7J00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 45.0 | 3.08e-01 | 90.7% | 64.7% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.55 | 48.0 | 4.05e-01 | 100.0% | 81.9% |
| 2q2rA02 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.55 | 39.0 | 2.76e-01 | 77.8% | 58.6% |
| 3ilvA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 39.0 | 2.50e-01 | 100.0% | 13.5% |
| 5fmgG00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 42.0 | 2.89e-01 | 92.6% | 57.5% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 43.0 | 4.12e-01 | 92.6% | 90.3% |
| 3vkgB06 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.52 | 43.0 | 2.80e-01 | 100.0% | 20.8% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 38.0 | 3.35e-01 | 88.9% | 75.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4953119 | 101.1.2.805 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF26350 | 0.75 | 61.0 | 4.29e-01 | 100.0% | 28.3% |
| 3280723 | 101.1.1.29 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 | 0.66 | 49.0 | 4.21e-01 | 79.6% | 53.3% |
| 3967873 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.62 | 51.0 | 5.15e-01 | 98.1% | 92.7% |
| 4941193 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.60 | 41.0 | 3.56e-01 | 77.8% | 45.9% |
| 5029254 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.58 | 46.0 | 3.21e-01 | 92.6% | 69.5% |
| 3285617 | 610.4.1.1 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY | 0.57 | 45.0 | 3.26e-01 | 87.0% | 33.8% |
| 3924085 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 39.0 | 3.37e-01 | 74.1% | 57.9% |
| 3205842 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 42.0 | 3.35e-01 | 100.0% | 36.7% |
| 3928823 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.55 | 46.0 | 2.83e-01 | 98.1% | 33.0% |
| 4027222 | 4250.1.1.1 ↗ | alpha bundles › Duffy-binding-like domain, N-terminal subdomain › Duffy-binding-like domain, N-terminal subdomain › Duffy-binding-like domain, N-terminal subdomain › Duffy_binding | 0.53 | 42.0 | 3.09e-01 | 100.0% | 46.3% |
| 3588371 | 148.1.3.278 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Bac_RepA_C | 0.52 | 40.0 | 3.07e-01 | 85.2% | 43.2% |
| 424637 | 616.1.1.4 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Flu_B_NS1 | 0.50 | 42.0 | 3.61e-01 | 100.0% | 69.1% |
D2
medium
residues 75-125
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kwaB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.69 | 57.0 | 3.95e-01 | 100.0% | 26.0% |
| 2hxiA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 53.0 | 5.04e-01 | 100.0% | 81.2% |
| 3dewA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 52.0 | 5.22e-01 | 100.0% | 96.2% |
| 2oqmB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.60 | 51.0 | 3.62e-01 | 100.0% | 47.3% |
| 2e19A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 45.0 | 4.60e-01 | 100.0% | 93.6% |
| 2yinA03 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.54 | 47.0 | 3.55e-01 | 100.0% | 63.3% |
| 1xp8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.53 | 37.0 | 3.54e-01 | 98.0% | 63.3% |
| 3ledA01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 44.0 | 2.93e-01 | 98.0% | 22.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081163 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.83 | 73.0 | 7.18e-01 | 100.0% | 90.9% |
| 4932170 | 101.1.1.551 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HNH_repeat | 0.82 | 66.0 | 6.65e-01 | 100.0% | 90.0% |
| 4938132 | 101.1.1.551 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HNH_repeat | 0.79 | 68.0 | 6.85e-01 | 98.0% | 100.0% |
| 3587164 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 66.0 | 6.29e-01 | 100.0% | 90.0% |
| 4932174 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 58.0 | 5.76e-01 | 100.0% | 81.8% |
| 3407245 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.63 | 43.0 | 3.25e-01 | 72.5% | 54.4% |
| 4028137 | 101.1.1.418 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › FF_PRPF40A | 0.63 | 52.0 | 5.15e-01 | 98.0% | 100.0% |
| 3264568 | 3748.1.1.3 ↗ | extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C | 0.56 | 41.0 | 3.25e-01 | 78.4% | 41.0% |
| 3507784 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.53 | 42.0 | 3.60e-01 | 100.0% | 52.2% |
| 3720111 | 11.9.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH | 0.53 | 47.0 | 2.99e-01 | 100.0% | 70.9% |
| 3677917 | 109.3.1.320 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DYW_deaminase | 0.51 | 39.0 | 3.01e-01 | 96.1% | 33.3% |
D3
medium
residues 141-206
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q16B03 | 1.10.3650.10 | Mainly Alpha › Orthogonal Bundle › nitrate reductase domain fold › nitrate reductase domain like | 0.74 | 37.0 | 3.48e-01 | 86.4% | 41.6% |
| 1bl0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 53.0 | 5.58e-01 | 93.9% | 92.9% |
| 3oouA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 51.0 | 5.45e-01 | 93.9% | 94.5% |
| 3oioA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 56.0 | 4.77e-01 | 97.0% | 72.3% |
| 1u8bA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 49.0 | 5.06e-01 | 95.5% | 90.2% |
| 2dofA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.64 | 48.0 | 4.53e-01 | 97.0% | 65.9% |
| 3mn2A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 53.0 | 4.61e-01 | 97.0% | 74.1% |
| 1sfeA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 50.0 | 4.70e-01 | 100.0% | 70.2% |
| 6xiuA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 43.0 | 3.84e-01 | 93.9% | 52.5% |
| 4rrfA01 | 3.50.80.10 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase | 0.59 | 48.0 | 3.84e-01 | 100.0% | 44.9% |
| 4gczB03 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.58 | 49.0 | 3.78e-01 | 98.5% | 60.2% |
| 4qicC01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.58 | 43.0 | 3.60e-01 | 83.3% | 70.4% |
| 1in4A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 46.0 | 4.55e-01 | 93.9% | 90.4% |
| 2k77A00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.57 | 42.0 | 3.35e-01 | 81.8% | 70.3% |
| 2bdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 41.0 | 3.07e-01 | 100.0% | 31.0% |
| 2pt5B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 38.0 | 2.84e-01 | 100.0% | 28.7% |
| 4ne4A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 38.0 | 2.99e-01 | 78.8% | 74.9% |
| 7mdhA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.54 | 42.0 | 3.06e-01 | 83.3% | 87.3% |
| 4a15A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 37.0 | 2.80e-01 | 100.0% | 27.7% |
| 1httA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 44.0 | 3.01e-01 | 100.0% | 70.4% |
| 1khyD00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.51 | 43.0 | 3.49e-01 | 100.0% | 84.2% |
| 1kf6A03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.51 | 44.0 | 3.69e-01 | 100.0% | 60.8% |
| 3hdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 41.0 | 3.12e-01 | 90.9% | 83.3% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4003342 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 59.0 | 4.69e-01 | 95.5% | 43.7% |
| 3971324 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.67 | 53.0 | 5.51e-01 | 95.5% | 96.7% |
| 3286669 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 51.0 | 5.39e-01 | 90.9% | 100.0% |
| 3944775 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.67 | 48.0 | 5.05e-01 | 95.5% | 85.0% |
| 3434146 | 3003.1.1.1 ↗ | a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM_N | 0.66 | 57.0 | 4.54e-01 | 100.0% | 92.9% |
| 3968277 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.64 | 48.0 | 5.05e-01 | 93.9% | 100.0% |
| 3976262 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.63 | 55.0 | 4.56e-01 | 97.0% | 66.1% |
| 3972891 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.63 | 52.0 | 4.62e-01 | 95.5% | 76.0% |
| 4590066 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.61 | 51.0 | 4.35e-01 | 97.0% | 69.0% |
| 3902570 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.58 | 39.0 | 2.75e-01 | 100.0% | 20.2% |
| 4624086 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.56 | 42.0 | 3.09e-01 | 81.8% | 76.1% |
| 4023380 | 2002.1.1.56 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus | 0.55 | 44.0 | 3.14e-01 | 97.0% | 27.4% |
| 4647040 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.54 | 37.0 | 2.74e-01 | 98.5% | 25.4% |
| None | — | 0.54 | 37.0 | 2.85e-01 | 74.2% | 83.4% | |
| 4143525 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.52 | 37.0 | 2.81e-01 | 77.3% | 81.4% |
| 3712735 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.51 | 36.0 | 2.77e-01 | 77.3% | 84.9% |
| None | — | 0.51 | 38.0 | 2.84e-01 | 81.8% | 68.1% | |
| 3585375 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.51 | 41.0 | 2.68e-01 | 93.9% | 18.3% |
| 5058057 | 2004.1.1.188 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 | 0.51 | 39.0 | 2.97e-01 | 86.4% | 83.9% |
| 4317307 | 2004.1.1.60 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SKI | 0.50 | 39.0 | 2.99e-01 | 87.9% | 87.1% |
D4
medium
residues 267-326_348-374
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s3qG00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 48.0 | 3.90e-01 | 92.0% | 87.1% |
| 8b3yA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 44.0 | 3.08e-01 | 90.8% | 99.7% |
| 4p02A02 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 46.0 | 3.33e-01 | 100.0% | 93.4% |
| 4lq6A00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.50 | 43.0 | 3.27e-01 | 95.4% | 44.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4002879 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.54 | 40.0 | 3.10e-01 | 78.2% | 95.3% |
| 4974163 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.54 | 40.0 | 3.01e-01 | 79.3% | 86.0% |
| 3592137 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.53 | 41.0 | 3.29e-01 | 83.9% | 46.1% |
| 4934575 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.52 | 43.0 | 3.39e-01 | 94.3% | 98.0% |
D5
medium
residues 375-430
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03457.20 best | HA | 40.3 | 4.30e-10 | 94.6% | 93.8% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zvwA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.66 | 57.0 | 5.43e-01 | 98.2% | 86.4% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.64 | 54.0 | 5.13e-01 | 100.0% | 88.6% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.62 | 54.0 | 5.10e-01 | 98.2% | 85.1% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.58 | 49.0 | 4.48e-01 | 100.0% | 69.2% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.58 | 48.0 | 4.35e-01 | 94.6% | 92.3% |
| 5mmjo00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.56 | 46.0 | 4.34e-01 | 100.0% | 86.7% |
| 2ebfX02 | 1.20.140.180 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.56 | 42.0 | 3.27e-01 | 87.5% | 37.1% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.53 | 36.0 | 3.13e-01 | 71.4% | 44.0% |
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.53 | 40.0 | 3.88e-01 | 91.1% | 73.0% |
| 7z7vF03 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.53 | 42.0 | 3.76e-01 | 98.2% | 60.2% |
| 7xcnM01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.52 | 43.0 | 3.97e-01 | 98.2% | 100.0% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.51 | 40.0 | 3.46e-01 | 94.6% | 80.0% |
| 3ezxA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.51 | 43.0 | 3.81e-01 | 100.0% | 90.7% |
| 7powA01 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.51 | 41.0 | 2.98e-01 | 100.0% | 75.8% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.50 | 39.0 | 3.34e-01 | 94.6% | 80.7% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3398282 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.68 | 42.0 | 4.06e-01 | 91.1% | 53.8% |
| 3574413 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.63 | 55.0 | 4.74e-01 | 100.0% | 91.1% |
| 3269226 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 44.0 | 4.07e-01 | 92.9% | 60.0% |
| 3528012 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.55 | 38.0 | 2.60e-01 | 96.4% | 18.7% |
| 5047897 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.51 | 40.0 | 3.61e-01 | 92.9% | 77.6% |
| 4930916 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.51 | 39.0 | 3.60e-01 | 92.9% | 69.4% |
| 5014616 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.51 | 42.0 | 2.93e-01 | 100.0% | 57.2% |
| 3420431 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.50 | 36.0 | 3.14e-01 | 75.0% | 50.6% |
| 4955947 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.50 | 41.0 | 3.76e-01 | 92.9% | 82.7% |
| 3282037 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.50 | 41.0 | 2.75e-01 | 96.4% | 61.2% |
D6
medium
residues 505-568
Domain cluster:
rep: JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00236__D375-430
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03457.20 best | HA | 65.3 | 6.90e-18 | 96.9% | 95.3% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gf2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.59 | 48.0 | 3.95e-01 | 95.3% | 87.3% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.57 | 46.0 | 4.58e-01 | 100.0% | 86.6% |
| 6v88A00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.56 | 47.0 | 3.94e-01 | 100.0% | 53.4% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 46.0 | 4.53e-01 | 100.0% | 88.6% |
| 1ze0A02 | 1.10.4070.10 | Mainly Alpha › Orthogonal Bundle › putative redox-enzyme maturation protein fold › putative redox-enzyme maturation protein domain | 0.54 | 38.0 | 3.63e-01 | 75.0% | 80.8% |
| 2ebfX02 | 1.20.140.180 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.53 | 46.0 | 3.55e-01 | 96.9% | 71.3% |
| 4k35A03 | 1.10.287.1170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › glycoside hydrolase family 81 endo-[beta] glucanase | 0.52 | 42.0 | 4.12e-01 | 96.9% | 84.3% |
D7
medium
residues 569-634
Domain cluster:
rep: JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00236__D375-430
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03457.20 best | HA | 69.8 | 2.60e-19 | 93.9% | 100.0% |