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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00238
Bact-VirJBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00238
Identity
- Kingdom:
- phage
Quality
70.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-56
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cg7A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.70 | 44.0 | 4.78e-01 | 81.8% | 76.1% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.69 | 52.0 | 4.13e-01 | 80.0% | 52.4% |
| 1m1gB03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 46.0 | 4.41e-01 | 74.5% | 60.3% |
| 2daqA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 48.0 | 3.78e-01 | 74.5% | 43.6% |
| 1n27A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 45.0 | 3.71e-01 | 74.5% | 44.8% |
| 2k6pA00 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.62 | 54.0 | 4.74e-01 | 100.0% | 70.2% |
| 2m1hA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 42.0 | 3.46e-01 | 72.7% | 81.8% |
| 3nrlA00 | 2.40.10.390 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 49.0 | 4.58e-01 | 87.3% | 83.8% |
| 2xrcC04 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 52.0 | 3.67e-01 | 98.2% | 75.8% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.59 | 42.0 | 3.39e-01 | 78.2% | 45.1% |
| 3kf8A00 | 2.40.50.1040 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 43.0 | 3.03e-01 | 83.6% | 61.4% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 42.0 | 3.06e-01 | 80.0% | 83.1% |
| 4hntA04 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.58 | 44.0 | 3.72e-01 | 85.5% | 79.2% |
| 5c0pA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 40.0 | 2.59e-01 | 74.5% | 23.6% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 48.0 | 2.95e-01 | 100.0% | 43.1% |
| 5i4nA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 42.0 | 3.61e-01 | 81.8% | 93.5% |
| 4i5sA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 41.0 | 3.56e-01 | 83.6% | 60.2% |
| 1ye9A02 | 2.40.470.10 | Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain | 0.55 | 37.0 | 3.05e-01 | 70.9% | 53.6% |
| 3abiA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 38.0 | 2.78e-01 | 74.5% | 28.2% |
| 4f98A00 | 2.30.140.50 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 | 0.54 | 37.0 | 3.64e-01 | 72.7% | 98.4% |
| 3sqfA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.54 | 41.0 | 3.54e-01 | 85.5% | 88.4% |
| 1pcfA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.54 | 38.0 | 3.69e-01 | 81.8% | 66.7% |
| 2kigA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.53 | 44.0 | 3.30e-01 | 100.0% | 90.1% |
| 1x6mC00 | 3.90.1590.10 | Alpha Beta › Alpha-Beta Complex › glutathione-dependent formaldehyde- activating enzyme (gfa) › glutathione-dependent formaldehyde- activating enzyme (gfa) | 0.53 | 38.0 | 2.71e-01 | 78.2% | 35.1% |
| 2x9aA00 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.53 | 38.0 | 3.68e-01 | 81.8% | 68.9% |
| 1x6cA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 39.0 | 3.25e-01 | 87.3% | 73.7% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 38.0 | 3.30e-01 | 80.0% | 59.6% |
| 8dy9I01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 35.0 | 2.40e-01 | 72.7% | 52.9% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 35.0 | 3.36e-01 | 74.5% | 60.3% |
| 3vwdA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 36.0 | 2.62e-01 | 80.0% | 46.9% |
| 1dfaA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.51 | 41.0 | 2.93e-01 | 100.0% | 89.1% |
| 1pfoA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.51 | 35.0 | 3.62e-01 | 76.4% | 83.0% |
| 1hdhA02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 35.0 | 3.26e-01 | 100.0% | 54.5% |
| 4l1nA00 | 2.40.128.660 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 | 0.51 | 40.0 | 3.08e-01 | 100.0% | 57.8% |
| 3zpmA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.51 | 34.0 | 2.37e-01 | 72.7% | 40.3% |
| 7szeB01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.50 | 37.0 | 3.12e-01 | 83.6% | 45.8% |
| 3md7A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 42.0 | 2.78e-01 | 98.2% | 29.6% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3597513 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 51.0 | 5.16e-01 | 80.0% | 72.7% |
| 3199259 | 4.1.1.286 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7072 | 0.72 | 51.0 | 4.90e-01 | 81.8% | 64.6% |
| 3219441 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.72 | 50.0 | 4.45e-01 | 74.5% | 52.5% |
| 3225768 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.66 | 46.0 | 3.31e-01 | 74.5% | 30.6% |
| 4962710 | 295.1.1.54 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF6360 | 0.66 | 44.0 | 3.91e-01 | 70.9% | 51.8% |
| 4008723 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.66 | 57.0 | 4.39e-01 | 100.0% | 46.2% |
| 3929839 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 56.0 | 4.23e-01 | 94.5% | 61.5% |
| 4962837 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.65 | 49.0 | 4.00e-01 | 83.6% | 44.5% |
| None | — | 0.64 | 47.0 | 3.07e-01 | 83.6% | 18.0% | |
| 4098695 | 223.1.1.6 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 | 0.64 | 47.0 | 3.09e-01 | 83.6% | 18.4% |
| 3787933 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.63 | 45.0 | 3.32e-01 | 78.2% | 86.3% |
| 3923769 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.62 | 53.0 | 4.67e-01 | 96.4% | 65.0% |
| 4682079 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.62 | 43.0 | 3.79e-01 | 78.2% | 48.2% |
| 3356591 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 47.0 | 4.01e-01 | 89.1% | 49.5% |
| 4632674 | 223.1.1.171 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_3-Cache_2 | 0.62 | 45.0 | 3.65e-01 | 85.5% | 39.1% |
| 4962860 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.62 | 53.0 | 4.18e-01 | 100.0% | 60.0% |
| 4952182 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.61 | 46.0 | 3.70e-01 | 81.8% | 50.9% |
| 4199524 | 223.1.1.6 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 | 0.61 | 44.0 | 2.96e-01 | 85.5% | 18.7% |
| 5034773 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.60 | 45.0 | 3.67e-01 | 83.6% | 50.9% |
| 3174953 | 69.1.1.2 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint | 0.60 | 44.0 | 3.06e-01 | 87.3% | 89.5% |
| 4960078 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.60 | 45.0 | 2.90e-01 | 81.8% | 21.9% |
| 4963695 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 45.0 | 3.68e-01 | 83.6% | 46.4% |
| 4977365 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.57 | 41.0 | 3.25e-01 | 85.5% | 33.8% |
| 3982478 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 47.0 | 3.65e-01 | 100.0% | 48.9% |
| 3249410 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 40.0 | 3.80e-01 | 81.8% | 82.6% |
| 3733008 | 2484.1.1.114 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C | 0.54 | 42.0 | 2.77e-01 | 96.4% | 80.0% |
| 3009336 | 3794.1.2.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase | 0.54 | 44.0 | 4.09e-01 | 96.4% | 72.6% |
| 3942222 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.54 | 40.0 | 3.27e-01 | 83.6% | 47.0% |
| 3791256 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.54 | 43.0 | 3.49e-01 | 90.9% | 94.5% |
| 3932770 | 11.1.4.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 | 0.54 | 38.0 | 3.09e-01 | 76.4% | 84.5% |
| 418817 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.53 | 40.0 | 2.80e-01 | 83.6% | 24.6% |
| 3585374 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 35.0 | 2.78e-01 | 70.9% | 35.2% |
| 5068089 | 283.1.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase | 0.52 | 38.0 | 3.16e-01 | 83.6% | 69.6% |
| 2858693 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.52 | 33.0 | 3.47e-01 | 81.8% | 73.5% |
| 3873771 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 36.0 | 2.97e-01 | 76.4% | 69.1% |
| 4975578 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.51 | 38.0 | 2.48e-01 | 83.6% | 32.4% |
| 3400775 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 36.0 | 2.85e-01 | 76.4% | 71.2% |
| 4963337 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.51 | 45.0 | 3.44e-01 | 100.0% | 47.7% |
| 4413814 | 867.1.1.2 ↗ | a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red | 0.51 | 38.0 | 2.62e-01 | 89.1% | 60.1% |
| 5083856 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.51 | 41.0 | 3.41e-01 | 100.0% | 51.3% |
| 3471260 | 5.1.4.661 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st | 0.50 | 40.0 | 2.48e-01 | 89.1% | 95.0% |
| 3520868 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 41.0 | 3.21e-01 | 100.0% | 72.9% |