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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00240
Bact-VirJBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00240
Identity
- Kingdom:
- phage
Quality
83.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 50-111
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e8vA00 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.65 | 44.0 | 4.07e-01 | 90.3% | 53.7% |
| 3l50A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.64 | 45.0 | 3.50e-01 | 88.7% | 33.8% |
| 1pm4A00 | 2.60.120.510 | Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm | 0.63 | 44.0 | 3.61e-01 | 90.3% | 39.3% |
| 1fiwA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 48.0 | 3.92e-01 | 100.0% | 44.2% |
| 2h6uA00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.61 | 47.0 | 3.87e-01 | 88.7% | 45.6% |
| 4bwcA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.61 | 36.0 | 3.78e-01 | 90.3% | 64.2% |
| 2crfA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 48.0 | 3.82e-01 | 85.5% | 72.0% |
| 4dixA01 | 2.60.40.2700 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 41.0 | 3.74e-01 | 88.7% | 50.6% |
| 4wgkA02 | 2.60.40.2300 | Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain | 0.61 | 49.0 | 3.81e-01 | 88.7% | 52.6% |
| 1wfuA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 46.0 | 4.01e-01 | 100.0% | 53.7% |
| 7yteC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 47.0 | 4.01e-01 | 85.5% | 65.3% |
| 7y6oA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 45.0 | 3.96e-01 | 88.7% | 53.6% |
| 5ynrA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.59 | 42.0 | 3.35e-01 | 88.7% | 34.8% |
| 3e1uA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.58 | 48.0 | 3.51e-01 | 95.2% | 85.3% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.58 | 48.0 | 4.40e-01 | 95.2% | 100.0% |
| 2qcsB02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 41.0 | 3.29e-01 | 88.7% | 37.6% |
| 4x83A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 43.0 | 3.68e-01 | 87.1% | 49.0% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 45.0 | 3.68e-01 | 90.3% | 64.3% |
| 4eq3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 45.0 | 3.75e-01 | 100.0% | 49.1% |
| 5j3tA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 44.0 | 3.51e-01 | 87.1% | 63.5% |
| 1tvgA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 42.0 | 3.28e-01 | 87.1% | 37.5% |
| 2crmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 3.82e-01 | 100.0% | 64.6% |
| 3dnhA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 46.0 | 3.58e-01 | 100.0% | 42.4% |
| 3shrA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 39.0 | 3.04e-01 | 88.7% | 34.3% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 44.0 | 3.71e-01 | 100.0% | 52.8% |
| 1g13A00 | 2.70.220.10 | Mainly Beta › Distorted Sandwich › Ganglioside M2 Activator Protein; Chain: A, › Ganglioside GM2 activator | 0.54 | 43.0 | 3.20e-01 | 88.7% | 58.0% |
| 1mc0A01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.54 | 37.0 | 2.82e-01 | 77.4% | 29.1% |
| 4ccdA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 38.0 | 2.53e-01 | 88.7% | 17.8% |
| 1o5lA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 38.0 | 3.03e-01 | 88.7% | 36.4% |
| 4d7pA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.53 | 44.0 | 3.81e-01 | 100.0% | 59.4% |
| 1pgsA01 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 42.0 | 3.33e-01 | 88.7% | 44.4% |
| 3nkgA00 | 2.60.120.790 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 42.0 | 3.07e-01 | 90.3% | 31.8% |
| 2pttB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 41.0 | 3.53e-01 | 88.7% | 61.1% |
| 4l1dC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.51e-01 | 88.7% | 62.4% |
| 2cdoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 41.0 | 3.24e-01 | 91.9% | 39.9% |
| 2kcqA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 43.0 | 3.38e-01 | 100.0% | 68.0% |
| 3npfA03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.52 | 45.0 | 3.40e-01 | 100.0% | 88.2% |
| 3pv7A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.60e-01 | 88.7% | 62.8% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 43.0 | 3.41e-01 | 100.0% | 61.2% |
| 5t89Y06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 3.48e-01 | 85.5% | 59.8% |
| 3dn7A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 36.0 | 2.87e-01 | 85.5% | 33.1% |
| 1gwmA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.50 | 37.0 | 2.84e-01 | 88.7% | 32.7% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3491852 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.64 | 45.0 | 3.53e-01 | 88.7% | 34.1% |
| 3732535 | 11.1.1.223 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ceramidse_alk_C | 0.62 | 50.0 | 3.85e-01 | 88.7% | 48.6% |
| 3595363 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 44.0 | 3.93e-01 | 91.9% | 53.3% |
| 5051674 | 11.1.1.471 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Kre9_KNH | 0.61 | 46.0 | 4.07e-01 | 91.9% | 54.7% |
| 3783236 | 3519.1.1.1 ↗ | beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p | 0.61 | 50.0 | 3.91e-01 | 90.3% | 90.8% |
| 3561036 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.59 | 48.0 | 3.44e-01 | 91.9% | 29.2% |
| 3594262 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.59 | 45.0 | 3.47e-01 | 93.5% | 35.9% |
| 3226640 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 51.0 | 4.38e-01 | 100.0% | 61.6% |
| 3176914 | 3519.1.1.1 ↗ | beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p | 0.58 | 48.0 | 3.87e-01 | 90.3% | 91.7% |
| 3553528 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.57 | 45.0 | 3.67e-01 | 87.1% | 54.2% |
| 3275811 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.57 | 49.0 | 3.89e-01 | 100.0% | 48.9% |
| 3517479 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.57 | 39.0 | 3.40e-01 | 90.3% | 45.0% |
| 3505201 | 1.1.3.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › UFD1_N1 | 0.57 | 44.0 | 4.66e-01 | 87.1% | 100.0% |
| 4941474 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 45.0 | 3.92e-01 | 88.7% | 67.4% |
| 4029648 | 221.1.1.30 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAP18 | 0.56 | 43.0 | 3.56e-01 | 88.7% | 44.2% |
| 4941843 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.56 | 45.0 | 3.50e-01 | 88.7% | 41.5% |
| 3927107 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.56 | 41.0 | 3.28e-01 | 90.3% | 39.2% |
| 3391885 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.56 | 44.0 | 3.60e-01 | 88.7% | 59.2% |
| 5041937 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 48.0 | 4.09e-01 | 100.0% | 61.0% |
| 3879556 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.56 | 44.0 | 3.21e-01 | 90.3% | 33.2% |
| 3789093 | 3519.1.1.1 ↗ | beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p | 0.55 | 46.0 | 3.90e-01 | 90.3% | 87.0% |
| 3251967 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.55 | 48.0 | 3.79e-01 | 100.0% | 51.1% |
| 4629301 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.55 | 44.0 | 3.12e-01 | 91.9% | 29.1% |
| 3471644 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.55 | 37.0 | 2.25e-01 | 75.8% | 10.5% |
| 3895813 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.55 | 43.0 | 3.42e-01 | 88.7% | 46.7% |
| 3398883 | 10.32.1.28 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC | 0.54 | 41.0 | 3.00e-01 | 87.1% | 29.1% |
| 3536562 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 42.0 | 3.08e-01 | 87.1% | 31.7% |
| 3700526 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 46.0 | 3.89e-01 | 100.0% | 60.9% |
| 3847998 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.54 | 42.0 | 3.31e-01 | 88.7% | 45.5% |
| 3390499 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.54 | 42.0 | 3.39e-01 | 91.9% | 59.3% |
| 2855394 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.53 | 42.0 | 3.39e-01 | 88.7% | 45.7% |
| 3274437 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.53 | 44.0 | 3.55e-01 | 100.0% | 44.9% |
| 3925634 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 42.0 | 4.11e-01 | 88.7% | 88.6% |
| 3617706 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 41.0 | 3.56e-01 | 87.1% | 87.0% |
| 3907591 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.52 | 45.0 | 3.95e-01 | 100.0% | 64.2% |
| 3909480 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.52 | 41.0 | 3.25e-01 | 88.7% | 43.7% |
| 5073454 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 43.0 | 3.68e-01 | 100.0% | 56.2% |
| 4327245 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.52 | 39.0 | 3.11e-01 | 87.1% | 37.9% |
| 5055931 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 45.0 | 3.79e-01 | 100.0% | 59.1% |
| 3798608 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.51 | 43.0 | 2.78e-01 | 100.0% | 30.3% |
| 3411669 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 44.0 | 3.72e-01 | 100.0% | 61.8% |
| 3773781 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.51 | 45.0 | 3.44e-01 | 100.0% | 48.3% |
| 3509176 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.51 | 42.0 | 3.18e-01 | 100.0% | 59.5% |
| 3901930 | 11.1.3.4 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › CHRD | 0.50 | 40.0 | 3.33e-01 | 96.8% | 93.3% |
| 5029611 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.50 | 40.0 | 2.97e-01 | 93.5% | 31.9% |
| 1152 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.50 | 37.0 | 2.84e-01 | 88.7% | 32.7% |