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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00261
Bact-VirJBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00261
Identity
- Kingdom:
- phage
Quality
92.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-78
Domain cluster:
rep: MN180250.1__QHJ75439.1__X__00003__D7-80
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF15781.13 best | ParE-like_toxin | 47.9 | 1.40e-12 | 100.0% | 85.1% |
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5bw0F00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.67 | 60.0 | 5.70e-01 | 98.7% | 86.8% |
| 6igbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 46.0 | 2.97e-01 | 74.4% | 34.4% |
| 1lkfA00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.65 | 51.0 | 3.45e-01 | 84.6% | 90.4% |
| 1so7A00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.62 | 44.0 | 2.85e-01 | 75.6% | 33.0% |
| 8eg0B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 43.0 | 2.82e-01 | 74.4% | 30.9% |
| 3gmvX00 | 3.10.450.730 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain | 0.61 | 43.0 | 3.48e-01 | 74.4% | 42.9% |
| 3sreA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.61 | 46.0 | 3.01e-01 | 79.5% | 94.2% |
| 2i52B00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.61 | 50.0 | 4.41e-01 | 91.0% | 66.4% |
| 1z24A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 42.0 | 3.19e-01 | 73.1% | 45.0% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 48.0 | 4.75e-01 | 91.0% | 82.1% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.59 | 53.0 | 4.59e-01 | 100.0% | 70.8% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 41.0 | 3.33e-01 | 73.1% | 49.3% |
| 4n6tA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 42.0 | 4.23e-01 | 79.5% | 73.4% |
| 2eabB01 | 2.70.98.50 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans | 0.59 | 46.0 | 3.29e-01 | 85.9% | 69.0% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 44.0 | 4.21e-01 | 84.6% | 69.7% |
| 6x05A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 47.0 | 3.02e-01 | 88.5% | 27.9% |
| 2xzhA00 | 2.130.10.110 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain | 0.57 | 43.0 | 2.72e-01 | 78.2% | 29.9% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 40.0 | 4.13e-01 | 76.9% | 76.3% |
| 5o46A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 45.0 | 3.93e-01 | 84.6% | 70.2% |
| 4hbrA00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 42.0 | 3.39e-01 | 78.2% | 55.0% |
| 2l4vA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 42.0 | 3.56e-01 | 82.1% | 83.0% |
| 1a90A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 43.0 | 3.88e-01 | 83.3% | 76.9% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.55 | 38.0 | 3.24e-01 | 73.1% | 48.5% |
| 2lexA00 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.55 | 36.0 | 3.93e-01 | 73.1% | 84.1% |
| 1ni9A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.54 | 46.0 | 3.69e-01 | 92.3% | 64.9% |
| 2bkkA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 38.0 | 3.61e-01 | 73.1% | 92.2% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.52 | 40.0 | 3.35e-01 | 84.6% | 85.3% |
| 6bm0A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 45.0 | 2.92e-01 | 97.4% | 25.7% |
| 2kxgA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 40.0 | 3.79e-01 | 83.3% | 68.4% |
| 1srqA01 | 3.30.1120.160 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 39.0 | 3.27e-01 | 80.8% | 51.4% |
| 2kieA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.52 | 39.0 | 3.40e-01 | 82.1% | 69.4% |
| 1ln1A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 43.0 | 3.21e-01 | 92.3% | 64.5% |
| 3ovcA01 | 3.30.200.150 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.52 | 37.0 | 3.83e-01 | 74.4% | 85.9% |
| 2wozA00 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.51 | 41.0 | 2.81e-01 | 88.5% | 87.0% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 37.0 | 2.51e-01 | 78.2% | 32.4% |
| 5hy7B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 41.0 | 2.66e-01 | 91.0% | 32.0% |
| 1w96C04 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 39.0 | 2.82e-01 | 85.9% | 83.6% |
| 5bv3D01 | 3.30.200.40 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain | 0.51 | 39.0 | 3.55e-01 | 85.9% | 93.8% |
| 2uvaG08 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 44.0 | 3.00e-01 | 100.0% | 27.6% |
| 2pmlX01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 36.0 | 3.17e-01 | 78.2% | 88.7% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589620 | 4312.1.1.11 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE-like_toxin | 0.90 | 76.0 | 7.17e-01 | 91.0% | 76.7% |
| 5056462 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.81 | 67.0 | 6.36e-01 | 87.2% | 75.6% |
| 2057235 | 4312.1.1.5 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › RelE | 0.80 | 65.0 | 5.75e-01 | 85.9% | 63.0% |
| 4942674 | 4312.1.1.15 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 | 0.76 | 53.0 | 5.61e-01 | 84.6% | 82.4% |
| 4993827 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.69 | 51.0 | 5.11e-01 | 83.3% | 76.2% |
| 5081030 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.67 | 47.0 | 4.80e-01 | 82.1% | 76.0% |
| 3972681 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.67 | 58.0 | 5.45e-01 | 94.9% | 84.0% |
| 3978531 | 223.1.1.58 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N | 0.66 | 58.0 | 4.59e-01 | 96.2% | 83.2% |
| 3272267 | 5.1.4.166 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_DCAF4 | 0.66 | 46.0 | 2.90e-01 | 73.1% | 26.9% |
| 5001593 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.65 | 51.0 | 4.28e-01 | 87.2% | 55.7% |
| 5062732 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.65 | 46.0 | 4.55e-01 | 84.6% | 69.4% |
| 5043802 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 42.0 | 3.72e-01 | 78.2% | 45.2% |
| 3725091 | 5.1.5.93 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N | 0.65 | 46.0 | 2.81e-01 | 74.4% | 23.7% |
| 4024769 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.64 | 44.0 | 4.77e-01 | 78.2% | 84.6% |
| 4324380 | 5.1.5.213 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF29037 | 0.64 | 44.0 | 2.77e-01 | 71.8% | 25.3% |
| 4262950 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.64 | 44.0 | 2.96e-01 | 71.8% | 27.8% |
| 5045117 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 43.0 | 4.73e-01 | 89.7% | 91.7% |
| 4033134 | 3264.1.1.0 ↗ | 0.63 | 50.0 | 4.05e-01 | 91.0% | 44.7% | |
| 3199490 | 5.1.4.369 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N | 0.63 | 45.0 | 2.55e-01 | 74.4% | 13.3% |
| 3941306 | 5.1.3.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase | 0.63 | 44.0 | 2.84e-01 | 73.1% | 37.1% |
| 3228051 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.62 | 42.0 | 4.51e-01 | 74.4% | 83.1% |
| 3457581 | 5.1.3.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 | 0.62 | 43.0 | 2.76e-01 | 71.8% | 30.3% |
| 3459798 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.62 | 45.0 | 2.90e-01 | 76.9% | 25.3% |
| 5061264 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.61 | 47.0 | 4.69e-01 | 82.1% | 82.5% |
| 4962639 | 283.3.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › MK0786-like › MK0786-like › DHNA | 0.61 | 48.0 | 4.33e-01 | 85.9% | 75.0% |
| 4019954 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.61 | 44.0 | 2.81e-01 | 75.6% | 25.5% |
| 3970689 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 50.0 | 4.24e-01 | 88.5% | 98.4% |
| 4028777 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.61 | 43.0 | 2.55e-01 | 74.4% | 18.7% |
| 5012108 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 41.0 | 2.72e-01 | 97.4% | 17.7% |
| 3174935 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 43.0 | 2.76e-01 | 75.6% | 31.8% |
| 3690349 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.60 | 41.0 | 2.46e-01 | 70.5% | 24.4% |
| 3932499 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.60 | 42.0 | 2.71e-01 | 74.4% | 23.9% |
| 4950203 | 331.4.1.35 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27341 | 0.60 | 41.0 | 2.90e-01 | 70.5% | 26.4% |
| 3826655 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.60 | 42.0 | 2.84e-01 | 73.1% | 35.5% |
| 3479716 | 3459.1.1.0 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule | 0.59 | 48.0 | 4.68e-01 | 92.3% | 80.0% |
| 3691934 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 44.0 | 2.67e-01 | 79.5% | 25.8% |
| 5037155 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 41.0 | 2.57e-01 | 74.4% | 28.1% |
| 3743855 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.58 | 40.0 | 2.63e-01 | 73.1% | 29.6% |
| 3263735 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 39.0 | 2.58e-01 | 70.5% | 30.3% |
| 3574976 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.58 | 36.0 | 4.03e-01 | 71.8% | 89.1% |
| 4024746 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.57 | 51.0 | 3.66e-01 | 100.0% | 95.2% |
| 3692244 | 5.1.4.436 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N | 0.57 | 50.0 | 2.84e-01 | 100.0% | 29.3% |
| 4960403 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.56 | 39.0 | 3.74e-01 | 71.8% | 73.3% |
| 4561984 | 3264.1.1.0 ↗ | 0.56 | 44.0 | 3.79e-01 | 89.7% | 51.5% | |
| 3499502 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 43.0 | 2.67e-01 | 80.8% | 28.5% |
| 3985863 | 219.1.1.109 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Toxin_15 | 0.56 | 44.0 | 3.24e-01 | 84.6% | 38.5% |
| 3176357 | 5.1.5.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N | 0.56 | 41.0 | 2.51e-01 | 76.9% | 18.5% |
| 5035423 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.56 | 41.0 | 4.07e-01 | 88.5% | 72.9% |
| 3645476 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.56 | 38.0 | 3.51e-01 | 70.5% | 70.0% |
| 3934016 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 41.0 | 2.63e-01 | 78.2% | 36.1% |
| 3262513 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.54 | 37.0 | 3.17e-01 | 70.5% | 87.5% |
| 4440945 | 5.1.3.48 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 | 0.53 | 38.0 | 2.59e-01 | 75.6% | 36.5% |
| 4943538 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.52 | 43.0 | 2.80e-01 | 94.9% | 62.6% |
| 5043009 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.52 | 43.0 | 2.73e-01 | 96.2% | 48.8% |
| 3261183 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.52 | 43.0 | 3.31e-01 | 89.7% | 41.7% |
| 5004871 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.52 | 38.0 | 3.62e-01 | 76.9% | 76.7% |
| 4937958 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.51 | 43.0 | 2.89e-01 | 94.9% | 76.0% |