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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00264
Bact-VirJBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00264
Identity
- Kingdom:
- phage
Quality
80.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-75
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xreA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.70 | 59.0 | 4.85e-01 | 100.0% | 67.0% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.68 | 58.0 | 4.72e-01 | 100.0% | 68.1% |
| 4lsdF00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 47.0 | 3.93e-01 | 73.7% | 54.1% |
| 2htdB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.66 | 46.0 | 3.60e-01 | 73.7% | 51.6% |
| 1gn4A02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.66 | 55.0 | 4.52e-01 | 100.0% | 67.0% |
| 3dnhA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 45.0 | 3.36e-01 | 73.7% | 45.7% |
| 4dohB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 44.0 | 3.90e-01 | 73.7% | 62.5% |
| 3doaA03 | 3.40.970.40 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like | 0.63 | 39.0 | 4.36e-01 | 70.2% | 81.4% |
| 2iabA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 44.0 | 3.30e-01 | 73.7% | 42.7% |
| 5mybA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 43.0 | 3.68e-01 | 73.7% | 57.3% |
| 2a2lC00 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.61 | 40.0 | 3.00e-01 | 84.2% | 26.6% |
| 2pn5A03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 42.0 | 3.50e-01 | 73.7% | 57.1% |
| 6dgiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.60 | 41.0 | 3.89e-01 | 100.0% | 58.8% |
| 4bkwA03 | 3.30.500.40 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.60 | 48.0 | 3.80e-01 | 91.2% | 62.7% |
| 4a2lB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 41.0 | 3.26e-01 | 73.7% | 39.0% |
| 6brbD00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 41.0 | 3.64e-01 | 73.7% | 62.1% |
| 1gsaA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.59 | 39.0 | 3.80e-01 | 96.5% | 58.5% |
| 3k5iA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.56 | 38.0 | 3.65e-01 | 100.0% | 60.0% |
| 3eoiA00 | 3.30.450.360 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 41.0 | 3.23e-01 | 80.7% | 84.6% |
| 4msxA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 42.0 | 2.64e-01 | 89.5% | 15.6% |
| 5w1eA01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.54 | 40.0 | 2.82e-01 | 100.0% | 24.6% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 38.0 | 2.70e-01 | 78.9% | 32.0% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.52 | 44.0 | 3.45e-01 | 100.0% | 66.2% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 36.0 | 3.46e-01 | 73.7% | 88.1% |
| 2i0kA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.52 | 36.0 | 2.86e-01 | 73.7% | 92.9% |
| 3k6yA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 36.0 | 3.22e-01 | 77.2% | 58.7% |
| 1m4kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 2.98e-01 | 71.9% | 55.1% |
| 4n5uA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 2.99e-01 | 75.4% | 52.8% |
| 5hw3A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 38.0 | 2.54e-01 | 82.5% | 88.1% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.50 | 38.0 | 3.21e-01 | 87.7% | 97.3% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4970989 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.70 | 47.0 | 4.54e-01 | 73.7% | 61.5% |
| 4070469 | 4.1.1.301 ↗ | beta barrels › SH3 › SH3 › SH3 › MJ1316 | 0.68 | 47.0 | 4.32e-01 | 73.7% | 70.7% |
| 3650990 | 274.1.1.44 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 | 0.67 | 55.0 | 4.43e-01 | 100.0% | 70.0% |
| 4999705 | 4.1.2.2 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 | 0.67 | 47.0 | 3.90e-01 | 73.7% | 62.1% |
| 4137160 | 4.1.1.301 ↗ | beta barrels › SH3 › SH3 › SH3 › MJ1316 | 0.64 | 46.0 | 4.08e-01 | 75.4% | 73.8% |
| 4094296 | 221.1.5.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Chemotaxis inhibitory protein CHIPS › FPRL1_inhibitor | 0.64 | 43.0 | 4.21e-01 | 100.0% | 63.1% |
| 4068345 | 4.1.2.2 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 | 0.62 | 44.0 | 3.96e-01 | 75.4% | 72.5% |
| 3297757 | 390.1.1.6 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 | 0.62 | 45.0 | 4.12e-01 | 80.7% | 63.7% |
| 5073888 | 4.1.2.2 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 | 0.61 | 43.0 | 3.92e-01 | 75.4% | 77.5% |
| 5033992 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 43.0 | 3.45e-01 | 73.7% | 47.0% |
| 3813966 | 390.1.1.6 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 | 0.60 | 47.0 | 4.34e-01 | 87.7% | 72.0% |
| 4013664 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.59 | 50.0 | 3.87e-01 | 100.0% | 55.7% |
| 4928827 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 42.0 | 3.28e-01 | 100.0% | 34.6% |
| 3222698 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 40.0 | 3.31e-01 | 77.2% | 53.3% |
| 4954132 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.55 | 41.0 | 3.56e-01 | 84.2% | 100.0% |
| 3544248 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.55 | 37.0 | 2.25e-01 | 71.9% | 43.7% |
| 4361962 | 221.1.1.180 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF25985 | 0.52 | 35.0 | 2.85e-01 | 71.9% | 41.7% |
| 3646521 | 4.2.1.4 ↗ | beta barrels › SH3 › SAND › SAND › TDBD | 0.52 | 35.0 | 3.26e-01 | 71.9% | 92.0% |
| 3609031 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 39.0 | 3.31e-01 | 84.2% | 95.0% |
| 4026431 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 35.0 | 3.39e-01 | 73.7% | 83.1% |