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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00326

Bact-Vir

JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00326

Identity

Kingdom:
phage

Quality

91.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-130
PDB
Domain cluster: representative
CATH (70)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.88 45.0 4.89e-01 100.0% 59.8%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.88 43.0 4.08e-01 100.0% 42.3%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.86 44.0 5.36e-01 100.0% 74.4%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 44.0 4.30e-01 100.0% 47.2%
3cwzB01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.83 42.0 3.82e-01 100.0% 38.4%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 46.0 5.78e-01 100.0% 89.9%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 49.0 6.17e-01 100.0% 97.2%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.81 45.0 4.82e-01 100.0% 63.3%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.80 49.0 5.15e-01 100.0% 67.6%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.79 48.0 4.10e-01 100.0% 39.4%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.76 45.0 3.39e-01 100.0% 26.5%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.76 42.0 4.45e-01 100.0% 60.2%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.74 47.0 4.77e-01 100.0% 64.0%
3ibpA01 1.20.58.850 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 37.0 4.56e-01 100.0% 76.4%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 42.0 5.12e-01 98.2% 87.7%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.73 47.0 5.29e-01 100.0% 82.2%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 49.0 4.77e-01 100.0% 63.6%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 48.0 5.09e-01 100.0% 76.5%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 40.0 4.27e-01 100.0% 62.6%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.71 44.0 5.32e-01 100.0% 98.6%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.70 50.0 4.86e-01 100.0% 66.4%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 48.0 5.12e-01 100.0% 80.0%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 41.0 5.04e-01 98.2% 100.0%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 45.0 4.61e-01 100.0% 69.1%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 39.0 4.93e-01 94.7% 100.0%
5y06A01 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 55.0 4.26e-01 100.0% 42.4%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.66 44.0 4.60e-01 100.0% 72.6%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.66 47.0 4.93e-01 100.0% 81.4%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 42.0 4.96e-01 93.8% 100.0%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.65 44.0 4.62e-01 100.0% 75.7%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 53.0 5.54e-01 100.0% 92.4%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.65 36.0 4.35e-01 100.0% 84.5%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 35.0 4.50e-01 94.7% 95.1%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.64 42.0 4.91e-01 99.1% 97.4%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.64 39.0 4.13e-01 98.2% 66.7%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.64 43.0 5.09e-01 99.1% 100.0%
4gczA03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.64 37.0 4.63e-01 92.9% 100.0%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.64 50.0 5.45e-01 100.0% 100.0%
1sziA02 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.63 52.0 4.95e-01 91.2% 99.3%
3tulB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.62 48.0 4.57e-01 99.1% 69.2%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 40.0 4.59e-01 100.0% 96.2%
3h3mA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.61 37.0 4.16e-01 92.9% 77.5%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.61 43.0 4.96e-01 98.2% 100.0%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.61 43.0 4.04e-01 100.0% 58.5%
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 45.0 3.70e-01 100.0% 41.1%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.61 42.0 4.21e-01 71.7% 86.3%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 40.0 4.62e-01 99.1% 100.0%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 51.0 3.93e-01 100.0% 42.8%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.59 41.0 4.71e-01 92.0% 98.8%
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 52.0 4.11e-01 100.0% 48.8%
4nqiD00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.59 44.0 3.43e-01 100.0% 37.5%
3x3bA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.59 52.0 3.97e-01 99.1% 81.5%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 37.0 4.33e-01 98.2% 97.3%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.58 43.0 3.97e-01 98.2% 59.2%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.58 41.0 4.05e-01 95.6% 68.9%
7sf8A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.58 44.0 3.43e-01 80.5% 86.3%
1y1uA01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.57 50.0 4.17e-01 100.0% 54.9%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.57 51.0 3.67e-01 100.0% 37.3%
4cgkA01 6.10.250.3150 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 51.0 4.06e-01 100.0% 50.5%
4ymuD00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.57 46.0 3.78e-01 88.5% 91.6%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.56 41.0 4.27e-01 100.0% 84.2%
3ly7A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 38.0 3.40e-01 71.7% 66.5%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.54 50.0 4.63e-01 100.0% 90.8%
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 47.0 4.41e-01 99.1% 99.3%
2rd0B00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 48.0 4.53e-01 100.0% 89.9%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 47.0 3.96e-01 96.5% 100.0%
4im0A04 1.20.1270.420 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 47.0 3.68e-01 100.0% 60.9%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 47.0 4.18e-01 100.0% 93.1%
4wpeA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.51 46.0 3.45e-01 100.0% 51.6%
7cc7A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 35.0 2.85e-01 71.7% 88.2%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3649819 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.78 44.0 4.28e-01 100.0% 50.4%
3621676 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.77 47.0 4.52e-01 100.0% 53.1%
1139567 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.77 44.0 4.73e-01 100.0% 66.0%
3217110 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.75 53.0 6.10e-01 100.0% 97.6%
4051951 605.2.1.0 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 0.75 51.0 5.67e-01 100.0% 87.8%
2323907 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.74 45.0 3.54e-01 100.0% 30.4%
3655688 3755.3.1.303 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th 0.73 50.0 4.28e-01 100.0% 45.7%
3925617 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.72 44.0 4.98e-01 100.0% 81.2%
3832250 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.72 41.0 3.87e-01 100.0% 46.7%
3932809 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.72 43.0 3.87e-01 100.0% 44.0%
3612915 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 42.0 4.36e-01 100.0% 62.9%
3229806 6157.1.1.1 alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP 0.69 48.0 4.86e-01 95.6% 70.4%
5064482 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.69 49.0 4.29e-01 100.0% 50.3%
4937862 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.68 51.0 5.18e-01 100.0% 79.1%
3855461 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.68 48.0 5.40e-01 99.1% 96.5%
3556027 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.68 48.0 5.40e-01 99.1% 96.5%
3487862 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.66 47.0 3.64e-01 99.1% 34.6%
3902100 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.66 47.0 5.26e-01 99.1% 97.6%
3473220 5086.1.1.209 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › LIN9_C 0.66 50.0 5.06e-01 100.0% 79.1%
3662019 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 47.0 4.32e-01 100.0% 57.9%
3511563 192.29.1.143 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › CCDC28 0.65 42.0 4.34e-01 87.6% 68.6%
4048127 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 46.0 5.26e-01 99.1% 96.5%
3715936 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.65 52.0 4.44e-01 100.0% 54.3%
3215342 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.65 48.0 5.20e-01 100.0% 91.6%
3201166 604.7.1.0 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.64 46.0 4.38e-01 100.0% 63.0%
3953227 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.64 44.0 4.68e-01 100.0% 80.0%
4548652 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.64 53.0 4.31e-01 100.0% 48.1%
3271624 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.64 43.0 2.87e-01 100.0% 17.7%
3531746 603.1.1.105 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.63 43.0 4.48e-01 100.0% 75.2%
3532664 3755.3.1.391 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › USHBP1_PDZ-bd 0.63 55.0 5.15e-01 95.6% 84.3%
5033885 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 54.0 4.33e-01 100.0% 49.8%
3222805 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.63 45.0 3.40e-01 74.3% 93.0%
3213526 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.63 44.0 4.53e-01 100.0% 78.1%
3491418 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.63 41.0 4.72e-01 98.2% 98.7%
3317382 605.4.1.5 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › SCAB-ABD, SCAB_CC 0.62 46.0 3.78e-01 100.0% 45.3%
3582204 4323.1.1.2 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V-ATPase_C 0.61 48.0 4.79e-01 97.3% 81.7%
3382066 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.61 42.0 4.14e-01 71.7% 100.0%
3879277 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.61 49.0 3.60e-01 85.8% 80.7%
3943738 5069.1.1.3 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_I 0.60 49.0 4.26e-01 89.4% 84.0%
4991089 5069.1.1.3 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_I 0.59 50.0 4.27e-01 92.0% 81.6%
3289134 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 52.0 4.35e-01 100.0% 57.3%
3978919 604.10.1.1 alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac › PTS_IIA 0.59 41.0 4.20e-01 71.7% 93.6%
3585432 604.1.1.98 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_Anc-1 0.59 41.0 4.15e-01 72.6% 91.3%
5079778 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 48.0 3.20e-01 100.0% 22.0%
3949246 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.58 51.0 4.56e-01 100.0% 99.4%
5025381 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.58 54.0 3.81e-01 100.0% 65.8%
3503335 604.1.1.124 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_6 0.58 43.0 4.30e-01 95.6% 74.8%
3470544 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.58 38.0 4.05e-01 83.2% 77.9%
3830963 603.1.1.100 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.58 41.0 4.06e-01 96.5% 70.0%
3933045 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.57 40.0 3.44e-01 71.7% 63.0%
4652719 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.57 43.0 4.61e-01 93.8% 93.7%
3315414 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.57 46.0 3.96e-01 100.0% 54.4%
4019360 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.57 52.0 4.62e-01 100.0% 72.5%
3167298 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.56 46.0 4.78e-01 100.0% 96.2%
3607087 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.56 40.0 3.75e-01 97.3% 58.6%
3704105 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.56 49.0 4.34e-01 100.0% 66.9%
3599614 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.56 43.0 3.22e-01 99.1% 32.1%
3594486 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 43.0 4.30e-01 96.5% 78.3%
4542972 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.55 49.0 4.06e-01 100.0% 86.8%
3633924 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.55 44.0 3.66e-01 89.4% 95.8%
5073085 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 49.0 4.37e-01 100.0% 74.4%
3832190 611.11.1.0 alpha bundles › N-cbl like › Plasmodium host cell traversal protein SPECT1 › Plasmodium host cell traversal protein SPECT1 0.54 38.0 3.33e-01 98.2% 46.1%
3825615 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.54 50.0 2.94e-01 100.0% 64.7%
4946568 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 50.0 3.08e-01 100.0% 30.1%
4084134 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 48.0 4.25e-01 100.0% 68.1%
3170937 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.54 41.0 3.21e-01 100.0% 34.2%
3738267 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 46.0 4.15e-01 100.0% 68.7%
4623646 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.53 49.0 3.31e-01 100.0% 28.9%
3235312 310.3.1.12 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › LMBR1 0.53 48.0 4.07e-01 100.0% 60.0%
4974229 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 43.0 3.69e-01 99.1% 55.4%
3716333 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.53 47.0 3.75e-01 95.6% 50.2%
3626481 603.1.1.105 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.53 39.0 4.00e-01 100.0% 80.0%
3348566 3291.1.1.106 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Chloroplast_duf 0.52 47.0 4.37e-01 99.1% 82.9%
4002015 4177.1.1.3 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Arfaptin 0.51 41.0 3.35e-01 100.0% 44.0%
3337008 192.2.1.60 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF21A_4th 0.51 48.0 4.44e-01 100.0% 92.1%
5002089 2004.1.1.144 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2 0.51 45.0 3.34e-01 100.0% 61.3%
4681339 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.51 45.0 3.96e-01 100.0% 91.8%
3598168 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.51 46.0 4.05e-01 100.0% 98.8%
3318812 192.8.1.248 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › KIF21A_4th 0.50 48.0 4.29e-01 100.0% 86.0%
D2 high residues 144-264
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1i8nA00 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.60 33.0 3.76e-01 83.5% 71.9%
1gmnA01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.59 35.0 3.95e-01 83.5% 78.4%
4wiqA02 3.30.70.1040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dystroglycan, domain 2 0.51 37.0 3.69e-01 96.7% 72.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3689958 3589.1.1.1 a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP 0.74 67.0 5.15e-01 96.7% 88.6%
3791666 3589.1.1.1 a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP 0.73 66.0 4.90e-01 95.9% 86.3%
3835364 3938.1.1.3 alpha arrays › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › PF26252 0.73 67.0 5.33e-01 98.3% 91.1%
3829878 3938.1.1.3 alpha arrays › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › PF26252 0.72 66.0 5.08e-01 97.5% 87.2%
3795155 3589.1.1.1 a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP 0.72 67.0 4.98e-01 99.2% 79.6%
3468824 3938.1.1.3 alpha arrays › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › PF26252 0.72 66.0 5.21e-01 99.2% 93.3%
3691211 3589.1.1.1 a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP 0.71 64.0 5.07e-01 97.5% 86.7%
3740962 3938.1.1.3 alpha arrays › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › PF26252 0.71 65.0 5.32e-01 99.2% 94.4%
3259748 3589.1.1.1 a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP 0.69 63.0 5.11e-01 98.3% 95.0%
None 0.67 61.0 5.33e-01 96.7% 93.1%
3934305 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.58 35.0 3.80e-01 81.8% 71.0%
3624167 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 30.0 3.41e-01 88.4% 76.7%
5056815 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.51 41.0 3.78e-01 89.3% 83.0%
D3 medium residues 267-412
PDB
D4 medium residues 413-424_507-624
PDB
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfA03 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.77 58.0 6.59e-01 90.0% 100.0%
1cz4A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.74 50.0 5.88e-01 83.1% 96.7%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.70 52.0 5.84e-01 83.8% 98.1%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.69 45.0 4.93e-01 80.8% 80.2%
7eu1A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.66 60.0 5.86e-01 96.9% 94.4%
1ynjD04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.63 58.0 5.61e-01 98.5% 100.0%
2g5dA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.55 46.0 3.96e-01 90.0% 85.6%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.54 33.0 3.65e-01 79.2% 74.8%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3696793 1.1.2.11 beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.79 67.0 7.15e-01 87.7% 100.0%
3643011 1.1.2.11 beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.77 67.0 6.71e-01 90.0% 100.0%
3966248 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 60.0 6.35e-01 98.5% 92.2%
3274137 1.1.2.11 beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.75 68.0 6.94e-01 99.2% 98.4%
3357414 1.1.2.11 beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.74 70.0 7.04e-01 98.5% 100.0%
3670775 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.74 60.0 6.31e-01 99.2% 92.5%
3519457 1.1.2.19 beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.73 52.0 6.00e-01 83.8% 100.0%
3596090 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 60.0 6.29e-01 99.2% 94.2%
3183266 1.1.2.11 beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.72 68.0 6.86e-01 98.5% 99.2%
3684523 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.72 61.0 6.23e-01 96.9% 92.0%
3722909 1.1.2.11 beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.71 68.0 6.71e-01 99.2% 100.0%
4890084 1.1.2.31 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.71 56.0 5.76e-01 98.5% 86.9%
4887355 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.70 55.0 5.65e-01 96.9% 84.7%
3391395 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 51.0 5.78e-01 90.8% 99.0%
5038954 1.1.2.47 beta barrels › cradle loop barrel › RIFT-related › double psi › PF27352 0.68 57.0 6.01e-01 92.3% 99.1%
4585893 1.1.2.22 beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N_fung 0.67 52.0 5.71e-01 80.0% 100.0%
3926811 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 50.0 5.60e-01 91.5% 100.0%
2886100 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 61.0 5.23e-01 96.9% 82.5%
5005269 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 55.0 5.41e-01 87.7% 97.1%
3374701 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.66 61.0 5.40e-01 98.5% 93.9%
4015760 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 61.0 5.24e-01 98.5% 96.9%
3680293 1.1.2.8 beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.65 50.0 5.58e-01 83.1% 99.0%
3509068 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.65 61.0 5.15e-01 98.5% 94.0%
4943460 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.65 60.0 5.21e-01 96.9% 94.1%
3836120 275.1.1.1 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.65 60.0 5.18e-01 98.5% 95.9%
1746098 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.65 59.0 5.39e-01 96.9% 91.7%
4026183 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.64 60.0 5.71e-01 98.5% 96.0%
3888411 1.1.2.40 beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N 0.64 49.0 5.44e-01 80.0% 100.0%
5081033 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 60.0 5.11e-01 99.2% 88.0%
3781180 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 52.0 5.60e-01 92.3% 100.0%
4129914 1.1.2.31 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.64 60.0 4.97e-01 99.2% 68.4%
5058903 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.64 60.0 5.15e-01 98.5% 91.6%
4886549 275.1.1.1 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.64 60.0 5.61e-01 99.2% 94.8%
3888404 1.1.2.38 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_PEX6 0.64 51.0 5.04e-01 83.8% 100.0%
3255733 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 47.0 5.34e-01 80.8% 100.0%
3925828 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.63 44.0 5.17e-01 82.3% 100.0%
5056546 3349.1.1.3 a+b two layers › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › PolC_DP2_cat 0.62 58.0 3.87e-01 100.0% 38.7%
3427279 1.1.2.8 beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.60 50.0 4.46e-01 87.7% 66.1%
3649428 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 28.0 3.08e-01 76.9% 53.3%
3193673 1.1.2.34 beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_N 0.56 51.0 4.78e-01 98.5% 84.9%
3623486 221.1.1.52 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.54 33.0 3.51e-01 89.2% 67.8%
D5 medium residues 425-506
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 41.0 3.86e-01 96.3% 52.0%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 42.0 3.92e-01 97.6% 54.5%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.61 35.0 3.58e-01 86.6% 55.4%
2lwxA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.61 37.0 3.69e-01 92.7% 56.8%
2ot4A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 38.0 3.51e-01 70.7% 76.6%
2xgcA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 42.0 3.62e-01 79.3% 93.0%
2uuzB00 1.10.10.2020 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam 0.55 41.0 4.13e-01 87.8% 77.6%
3nrgA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 44.0 3.23e-01 87.8% 59.0%
3m1mA03 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.54 38.0 3.49e-01 73.2% 92.7%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.53 42.0 3.91e-01 95.1% 67.6%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 35.0 3.37e-01 95.1% 56.7%
1bvp103 1.10.170.10 Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 0.51 36.0 3.50e-01 75.6% 81.2%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.51 41.0 4.01e-01 96.3% 81.6%
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.51 43.0 3.73e-01 96.3% 80.3%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.50 39.0 4.06e-01 86.6% 88.2%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.50 36.0 3.14e-01 75.6% 72.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3737781 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.65 44.0 4.01e-01 96.3% 53.3%
5036728 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.64 42.0 4.48e-01 93.9% 77.1%
5079025 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.64 42.0 4.46e-01 95.1% 78.6%
3177082 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.62 39.0 4.45e-01 86.6% 86.7%
5060143 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.62 44.0 4.45e-01 100.0% 75.0%
3840404 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.61 33.0 3.72e-01 82.9% 68.3%
4937584 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.60 44.0 4.60e-01 91.5% 85.3%
3794285 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.58 39.0 4.12e-01 70.7% 89.3%
3220791 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.57 47.0 3.69e-01 95.1% 96.8%
3593000 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.56 38.0 3.80e-01 93.9% 67.1%
3708540 7000.1.1.2 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › RBD_LARS1 0.56 33.0 3.50e-01 89.0% 64.0%
3926720 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.56 36.0 3.98e-01 84.1% 83.1%
4615969 150.8.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.55 45.0 3.58e-01 96.3% 45.6%
3568856 198.1.1.1 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.54 45.0 4.38e-01 96.3% 84.4%
4224925 4336.2.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 0.54 46.0 4.49e-01 93.9% 100.0%
3775067 198.1.1.21 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA, SapB_2 0.54 45.0 4.01e-01 96.3% 64.2%
3552184 1045.1.1.1 alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Mre11_DNA_bind 0.53 40.0 3.73e-01 98.8% 63.8%
4157096 5058.1.1.16 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.52 42.0 4.15e-01 96.3% 82.2%
3451017 604.1.1.242 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28744 0.52 45.0 3.68e-01 100.0% 72.5%
5070668 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 35.0 3.60e-01 98.8% 77.3%
4181400 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.51 27.0 2.97e-01 86.6% 60.0%
3518047 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 42.0 4.04e-01 96.3% 76.8%
3733518 101.1.2.392 alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.50 39.0 3.42e-01 87.8% 64.4%
D6 medium residues 640-743
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.72 50.0 5.07e-01 71.2% 82.4%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 48.0 5.03e-01 71.2% 96.7%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.67 48.0 4.21e-01 76.0% 80.3%
3hl1B01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 49.0 3.82e-01 86.5% 97.7%
6l1kA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.60 50.0 4.03e-01 89.4% 95.4%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 51.0 4.07e-01 96.2% 63.3%
1oj7A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.58 48.0 3.90e-01 90.4% 97.1%
2gbbB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.56 39.0 3.38e-01 71.2% 92.3%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.54 44.0 4.14e-01 86.5% 81.7%
1binA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 37.0 3.36e-01 73.1% 86.0%
3pivA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 40.0 3.50e-01 83.7% 55.8%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3237245 3588.1.1.2 alpha complex topology › RNAi polymerase helical domain › RNAi polymerase helical domain › RNAi polymerase helical domain › RdRP, PF26253 0.82 70.0 4.58e-01 100.0% 23.5%
3516457 3588.1.1.2 alpha complex topology › RNAi polymerase helical domain › RNAi polymerase helical domain › RNAi polymerase helical domain › RdRP, PF26253 0.81 69.0 4.63e-01 100.0% 26.5%
3381261 3588.1.1.2 alpha complex topology › RNAi polymerase helical domain › RNAi polymerase helical domain › RNAi polymerase helical domain › RdRP, PF26253 0.80 69.0 4.50e-01 100.0% 22.9%
3374224 3588.1.1.2 alpha complex topology › RNAi polymerase helical domain › RNAi polymerase helical domain › RNAi polymerase helical domain › RdRP, PF26253 0.80 68.0 4.70e-01 100.0% 28.8%
3632080 3588.1.1.2 alpha complex topology › RNAi polymerase helical domain › RNAi polymerase helical domain › RNAi polymerase helical domain › RdRP, PF26253 0.79 69.0 4.63e-01 100.0% 26.5%
3743783 3588.1.1.2 alpha complex topology › RNAi polymerase helical domain › RNAi polymerase helical domain › RNAi polymerase helical domain › RdRP, PF26253 0.78 69.0 4.60e-01 100.0% 26.5%
3238076 3588.1.1.2 alpha complex topology › RNAi polymerase helical domain › RNAi polymerase helical domain › RNAi polymerase helical domain › RdRP, PF26253 0.76 70.0 4.65e-01 100.0% 27.7%
3238406 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.67 46.0 3.65e-01 70.2% 43.3%
3595205 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.64 44.0 3.46e-01 70.2% 39.1%
3928218 135.1.1.1 alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha 0.63 47.0 4.55e-01 79.8% 74.2%
3685594 4002.1.1.5 alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › ADH_Fe_C 0.63 53.0 4.20e-01 93.3% 95.0%
3367982 632.15.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › GAUT_1 0.60 46.0 5.06e-01 83.7% 100.0%
3662390 632.15.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › GAUT_1 0.59 45.0 4.73e-01 82.7% 89.5%
353472 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.57 36.0 3.55e-01 70.2% 58.3%
3167600 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 32.0 2.77e-01 89.4% 39.4%
D7 medium residues 757-867
PDB