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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00330

Bact-Vir

JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00330

Identity

Kingdom:
phage

Quality

78.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-41
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.82 58.0 4.45e-01 74.4% 62.7%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 4.27e-01 71.8% 44.4%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 55.0 4.30e-01 79.5% 45.2%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.75 53.0 3.95e-01 74.4% 63.8%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 4.49e-01 84.6% 55.6%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.74 53.0 3.07e-01 79.5% 8.7%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.73 52.0 3.70e-01 76.9% 30.5%
2cpjA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.72 53.0 3.99e-01 82.1% 33.3%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 3.72e-01 87.2% 27.0%
2m9kA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.71 53.0 4.10e-01 84.6% 37.6%
5uayA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.71 55.0 4.45e-01 92.3% 51.8%
3bb5A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 50.0 3.76e-01 76.9% 66.0%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 4.44e-01 87.2% 53.3%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.69 56.0 4.69e-01 92.3% 55.9%
1xmkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 3.95e-01 76.9% 45.6%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.69 48.0 3.04e-01 71.8% 16.4%
4b09B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 3.58e-01 76.9% 32.7%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 56.0 4.45e-01 94.9% 48.8%
4fxxB01 6.10.140.1790 Special › Helix non-globular › Helix Hairpins › 0.67 54.0 4.30e-01 87.2% 93.1%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 49.0 3.26e-01 79.5% 93.2%
1u02A02 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.66 53.0 4.26e-01 94.9% 44.7%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 3.62e-01 74.4% 41.5%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.65 52.0 3.94e-01 89.7% 37.2%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.64 55.0 3.30e-01 100.0% 80.3%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 51.0 3.00e-01 89.7% 14.9%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.63 47.0 2.98e-01 84.6% 81.5%
2joeA01 3.30.1830.10 Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like 0.63 49.0 3.55e-01 92.3% 28.9%
8c9vA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 49.0 3.33e-01 97.4% 93.4%
1i6uA01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.63 43.0 3.76e-01 76.9% 51.5%
8k1fC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 48.0 3.20e-01 94.9% 88.8%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 54.0 4.30e-01 97.4% 48.1%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.62 43.0 2.95e-01 74.4% 23.3%
3i4pA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.61 49.0 3.85e-01 94.9% 41.7%
3iwcB00 3.30.360.110 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase domain 0.61 52.0 4.52e-01 97.4% 68.9%
5adxJ01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.59 45.0 3.45e-01 84.6% 94.6%
1kgsA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.54e-01 89.7% 37.8%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 3.35e-01 92.3% 39.4%
1rfmA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.59 49.0 3.50e-01 97.4% 47.0%
2x7gA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 50.0 3.82e-01 94.9% 47.7%
3h2zA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 43.0 2.88e-01 89.7% 48.7%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.58 51.0 3.71e-01 100.0% 90.8%
3eoeD01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.58 49.0 3.39e-01 94.9% 61.3%
2uvaG11 6.10.60.10 Special › Helix non-globular › Hydrophobic Seed Protein › 0.58 45.0 4.05e-01 87.2% 80.0%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.58 45.0 3.85e-01 97.4% 84.0%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 43.0 3.15e-01 89.7% 36.9%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 49.0 3.99e-01 100.0% 53.3%
2amyA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.56 47.0 3.60e-01 100.0% 39.2%
3fvyA03 3.30.70.2600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 3.54e-01 92.3% 56.0%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.56 44.0 3.26e-01 92.3% 33.0%
1oyiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.64e-01 84.6% 88.7%
1i94H01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 47.0 3.75e-01 97.4% 98.7%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.24e-01 94.9% 37.6%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 45.0 3.42e-01 100.0% 75.6%
2mbfA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.32e-01 100.0% 41.2%
1r89A04 3.30.70.1550 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Archaeal tRNA CCA-adding enzyme catalytic domain 0.51 36.0 3.53e-01 89.7% 65.9%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3321176 5051.1.1.6 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.79 60.0 3.35e-01 82.1% 12.7%
3538243 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.73 53.0 4.24e-01 79.5% 67.5%
3723153 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.72 52.0 2.95e-01 76.9% 7.4%
3686838 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.72 53.0 5.29e-01 87.2% 100.0%
3229643 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.72 54.0 3.82e-01 82.1% 99.2%
3281770 304.4.1.3 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.69 47.0 3.64e-01 71.8% 61.1%
1414926 101.1.2.224 alpha arrays › HTH › HTH › winged helix domain › DUF6945 0.69 53.0 3.81e-01 84.6% 32.2%
3220687 3012.1.1.5 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › T6PP_C 0.69 58.0 4.42e-01 97.4% 41.1%
3386295 3079.1.1.0 extended segments › RNA polymerase PB2 N-terminal fragment › RNA polymerase PB2 N-terminal fragment › RNA polymerase PB2 N-terminal fragment 0.69 49.0 5.34e-01 79.5% 100.0%
5016971 225.2.1.1 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.68 57.0 3.57e-01 100.0% 72.2%
4936127 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.67 53.0 4.46e-01 94.9% 50.7%
4099043 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.66 52.0 4.39e-01 94.9% 50.7%
5036372 320.2.1.1 a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.66 48.0 4.14e-01 82.1% 52.3%
4118092 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.65 56.0 4.60e-01 100.0% 53.3%
3865234 7581.1.1.22 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt 0.65 50.0 3.12e-01 97.4% 85.7%
4209732 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.65 55.0 4.26e-01 100.0% 41.1%
3789609 7581.1.1.0 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.65 53.0 3.06e-01 97.4% 59.3%
3926827 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.65 56.0 3.11e-01 100.0% 34.6%
5076583 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.64 52.0 4.32e-01 94.9% 52.0%
4561700 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.64 47.0 3.70e-01 82.1% 40.0%
4029803 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 55.0 3.81e-01 97.4% 30.0%
4971608 243.6.1.5 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › UPF0113_N 0.64 47.0 4.11e-01 84.6% 96.9%
5041788 3715.1.1.0 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e 0.64 48.0 3.82e-01 94.9% 36.7%
4567496 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.63 49.0 4.16e-01 94.9% 57.3%
4463651 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.63 51.0 3.70e-01 89.7% 34.3%
3790375 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.63 53.0 3.76e-01 97.4% 34.4%
3925943 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.62 48.0 3.38e-01 100.0% 31.5%
4994238 316.1.1.18 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.61 51.0 2.99e-01 97.4% 35.8%
3735235 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 41.0 3.52e-01 76.9% 41.4%
5082791 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.60 50.0 3.37e-01 100.0% 99.4%
4937090 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.60 45.0 3.77e-01 84.6% 44.9%
3797522 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 55.0 3.97e-01 100.0% 44.0%
5060418 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 52.0 3.66e-01 97.4% 31.7%
3640563 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 51.0 4.24e-01 100.0% 52.0%
3589866 101.1.2.66 alpha arrays › HTH › HTH › winged helix domain › Mga 0.59 46.0 3.66e-01 94.9% 41.2%
4603329 101.1.2.108 alpha arrays › HTH › HTH › winged helix domain › PuR_N 0.59 49.0 3.95e-01 94.9% 57.5%
3960654 239.4.1.2 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › GSIII_N 0.58 42.0 3.17e-01 79.5% 56.2%
4525632 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.58 49.0 3.62e-01 100.0% 36.5%
4025698 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 50.0 3.18e-01 100.0% 41.1%
3983509 4344.1.1.0 0.56 43.0 3.14e-01 89.7% 40.0%
3990034 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.56 41.0 3.22e-01 82.1% 65.6%
4968723 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 2.88e-01 74.4% 29.2%
4583415 320.2.1.1 a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.55 45.0 3.80e-01 97.4% 86.7%
3288015 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.55 46.0 3.79e-01 94.9% 82.9%
6909 223.3.1.1 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.54 48.0 4.25e-01 100.0% 83.6%
4801579 327.19.1.0 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.50 35.0 3.54e-01 82.1% 80.6%