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JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00331
Bact-VirJBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00331
Identity
- Kingdom:
- phage
Quality
75.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 13-86
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2h4oA00 | 6.20.120.10 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.79 | 47.0 | 5.16e-01 | 93.2% | 72.6% |
| 3gnnB02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.70 | 47.0 | 4.26e-01 | 100.0% | 50.5% |
| 2z86D01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.65 | 47.0 | 3.09e-01 | 93.2% | 17.1% |
| 6lfnA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.65 | 48.0 | 3.32e-01 | 93.2% | 22.6% |
| 8k5lA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 46.0 | 3.45e-01 | 98.6% | 29.3% |
| 2nqlA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.62 | 48.0 | 3.48e-01 | 100.0% | 28.6% |
| 1zccA00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.62 | 51.0 | 3.69e-01 | 95.9% | 43.3% |
| 3nd5A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.61 | 46.0 | 3.72e-01 | 83.8% | 72.4% |
| 2yk4A01 | 3.30.370.20 | Alpha Beta › 2-Layer Sandwich › Barnase; Chain D › | 0.60 | 43.0 | 4.18e-01 | 94.6% | 68.3% |
| 3fysA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.60 | 49.0 | 4.19e-01 | 93.2% | 80.6% |
| 1kjnA00 | 3.40.50.10160 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MTH777-like | 0.60 | 44.0 | 3.55e-01 | 79.7% | 82.2% |
| 2mzbA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.59 | 49.0 | 3.61e-01 | 91.9% | 34.7% |
| 3nv7A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 45.0 | 3.64e-01 | 91.9% | 41.3% |
| 3gzdA03 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 44.0 | 3.35e-01 | 97.3% | 32.5% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.56 | 46.0 | 4.08e-01 | 93.2% | 70.2% |
| 1gtkA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 36.0 | 3.32e-01 | 87.8% | 48.0% |
| 2a4aA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 48.0 | 3.33e-01 | 100.0% | 28.8% |
| 2yxdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 44.0 | 3.36e-01 | 87.8% | 42.5% |
| 5aa2B02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 38.0 | 3.57e-01 | 89.2% | 56.2% |
| 6jtdA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 48.0 | 3.32e-01 | 100.0% | 50.0% |
| 4yt9A01 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.55 | 39.0 | 2.63e-01 | 75.7% | 69.0% |
| 7w01A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 44.0 | 3.16e-01 | 90.5% | 48.0% |
| 2yxlA04 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 44.0 | 3.32e-01 | 95.9% | 47.3% |
| 1xdzA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 43.0 | 3.10e-01 | 91.9% | 37.8% |
| 2py5A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 46.0 | 3.52e-01 | 100.0% | 48.4% |
| 4u1qA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 43.0 | 3.24e-01 | 89.2% | 44.4% |
| 2acvA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 45.0 | 3.17e-01 | 100.0% | 49.6% |
| 7cluA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 44.0 | 3.23e-01 | 97.3% | 77.2% |
| 3djcB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 42.0 | 4.00e-01 | 89.2% | 90.9% |
| 1floA01 | 3.30.300.80 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) | 0.53 | 37.0 | 3.43e-01 | 77.0% | 100.0% |
| 3mweB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 45.0 | 3.77e-01 | 100.0% | 87.7% |
| 2bfwA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 43.0 | 3.29e-01 | 93.2% | 64.0% |
| 2gt1A02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.52 | 38.0 | 3.07e-01 | 93.2% | 36.3% |
| 5lqdD01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.52 | 42.0 | 3.13e-01 | 100.0% | 67.5% |
| 1eljA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 39.0 | 3.07e-01 | 87.8% | 83.6% |
| 1dqnA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 43.0 | 3.15e-01 | 100.0% | 47.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3688544 | 300.1.1.3 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Tyr-DNA_phospho | 0.78 | 54.0 | 3.89e-01 | 91.9% | 27.2% |
| 3273866 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.69 | 52.0 | 3.19e-01 | 82.4% | 38.7% |
| 3333209 | 148.1.3.1 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › NB-ARC | 0.65 | 44.0 | 3.66e-01 | 70.3% | 40.0% |
| 3958748 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.65 | 45.0 | 3.41e-01 | 87.8% | 30.0% |
| 3573735 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.63 | 49.0 | 4.29e-01 | 94.6% | 55.7% |
| 8791 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.62 | 51.0 | 3.69e-01 | 95.9% | 43.3% |
| 5066229 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.60 | 44.0 | 2.92e-01 | 91.9% | 18.1% |
| 3292142 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 52.0 | 3.82e-01 | 97.3% | 46.7% |
| 4459913 | 2007.1.19.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › SAT | 0.58 | 49.0 | 3.35e-01 | 97.3% | 58.6% |
| 4092963 | 2006.1.6.38 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF444 | 0.58 | 48.0 | 3.53e-01 | 91.9% | 74.5% |
| 4260774 | 2007.1.19.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › SAT | 0.57 | 48.0 | 3.30e-01 | 97.3% | 58.6% |
| 5057750 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.57 | 42.0 | 3.19e-01 | 93.2% | 30.8% |
| 2722070 | 301.13.1.3 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › FakA-like_C | 0.57 | 46.0 | 4.20e-01 | 91.9% | 83.8% |
| 3273599 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 47.0 | 4.06e-01 | 91.9% | 66.1% |
| 5078159 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.57 | 39.0 | 3.44e-01 | 87.8% | 46.1% |
| 3238056 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.56 | 46.0 | 3.15e-01 | 94.6% | 48.4% |
| 3327609 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.56 | 39.0 | 4.05e-01 | 94.6% | 81.4% |
| 5024941 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.55 | 45.0 | 3.19e-01 | 93.2% | 31.7% |
| 5035911 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.55 | 40.0 | 3.44e-01 | 79.7% | 98.4% |
| None | — | 0.53 | 45.0 | 3.20e-01 | 100.0% | 94.9% | |
| 4945585 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 46.0 | 3.21e-01 | 100.0% | 29.4% |
| 4952921 | 2007.15.1.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › DUF4062 | 0.52 | 42.0 | 3.42e-01 | 91.9% | 76.1% |
| 3265430 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.51 | 42.0 | 2.79e-01 | 90.5% | 70.8% |
| 3376359 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 44.0 | 3.29e-01 | 100.0% | 49.7% |
| 3324739 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.50 | 41.0 | 3.58e-01 | 93.2% | 72.9% |