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JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00026
Bact-VirJBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00026
Identity
- Kingdom:
- phage
Quality
81.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 57-130
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5uh5D02 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.60 | 41.0 | 3.36e-01 | 70.3% | 94.2% |
| 3wozB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.51 | 42.0 | 3.04e-01 | 93.2% | 72.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3603102 | 109.4.1.623 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1 | 0.60 | 45.0 | 3.85e-01 | 82.4% | 59.2% |
| 5028888 | 109.4.1.158 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERAP1_C | 0.57 | 49.0 | 3.37e-01 | 100.0% | 42.1% |
| 3900684 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.55 | 40.0 | 3.26e-01 | 77.0% | 88.9% |
| 4020501 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.54 | 44.0 | 2.64e-01 | 95.9% | 57.5% |
| 3775904 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.53 | 44.0 | 2.94e-01 | 95.9% | 85.7% |
| 3619585 | 109.4.1.84 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › API5 | 0.53 | 43.0 | 3.26e-01 | 93.2% | 78.0% |
| 3935565 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 43.0 | 2.97e-01 | 95.9% | 88.5% |
| 4996947 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.51 | 43.0 | 2.86e-01 | 97.3% | 95.9% |
| 2675778 | 109.12.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain of Ku80 › C-terminal domain of Ku80 › Ku_PK_bind | 0.51 | 37.0 | 3.05e-01 | 79.7% | 77.5% |
| 3479739 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 44.0 | 2.56e-01 | 100.0% | 42.2% |
D2
medium
residues 131-197
Domain cluster:
rep: OK283618.1__UCR92177.1__LPLM1_00042__00042__D87-159
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02945.22 best | Endonuclease_7 | 79.2 | 2.50e-22 | 100.0% | 81.7% |