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JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00031

Bact-Vir

JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00031

Identity

Kingdom:
phage

Quality

90.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-97
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lwjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.70 38.0 4.91e-01 79.8% 100.0%
4aeeA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.69 45.0 5.26e-01 83.0% 94.0%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.69 34.0 3.54e-01 88.3% 49.4%
6fmeA03 2.20.220.10 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases 0.67 37.0 4.41e-01 84.0% 80.6%
2bhzA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 48.0 5.34e-01 81.9% 97.2%
5do8B03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 50.0 5.47e-01 83.0% 97.4%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.66 37.0 4.50e-01 98.9% 86.9%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 39.0 3.55e-01 100.0% 44.9%
2ze0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 50.0 5.43e-01 81.9% 98.7%
3ucqA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 49.0 5.30e-01 81.9% 100.0%
2wc7A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 47.0 5.11e-01 83.0% 93.7%
1cgtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 50.0 5.02e-01 84.0% 92.6%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 43.0 4.00e-01 100.0% 55.8%
4xb3A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 46.0 5.15e-01 81.9% 100.0%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 43.0 3.93e-01 100.0% 55.0%
7jjtA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 48.0 5.01e-01 81.9% 95.5%
4aieA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 45.0 5.08e-01 81.9% 100.0%
3edfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 49.0 5.23e-01 84.0% 98.8%
1m53A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 47.0 5.17e-01 84.0% 100.0%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 31.0 3.52e-01 81.9% 63.4%
5brqA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 47.0 5.06e-01 81.9% 98.8%
1uokA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 48.0 5.18e-01 83.0% 100.0%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 48.0 4.94e-01 84.0% 94.3%
4gklA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 47.0 4.90e-01 83.0% 97.7%
5zceA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 47.0 5.12e-01 83.0% 100.0%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 47.0 5.09e-01 83.0% 100.0%
5z0uA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 47.0 4.81e-01 83.0% 94.4%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.60 34.0 3.15e-01 83.0% 43.4%
3zssA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 47.0 4.85e-01 84.0% 100.0%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 47.0 4.60e-01 84.0% 86.3%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 53.0 4.96e-01 98.9% 94.1%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.59 33.0 3.68e-01 81.9% 70.4%
2qziA00 3.40.1720.10 Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like 0.59 52.0 5.10e-01 98.9% 98.0%
1hn0A04 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.59 51.0 4.66e-01 94.7% 90.2%
4amwA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 52.0 4.53e-01 100.0% 91.9%
5cfvA01 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.57 45.0 4.34e-01 86.2% 86.0%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.57 45.0 3.74e-01 86.2% 77.5%
2bkkA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 42.0 4.30e-01 83.0% 83.3%
4e2gC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 45.0 4.09e-01 88.3% 89.7%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 37.0 3.68e-01 71.3% 75.5%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 3.24e-01 98.9% 90.2%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.53 46.0 3.49e-01 95.7% 70.4%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.53 40.0 3.65e-01 84.0% 65.9%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.66e-01 100.0% 57.6%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 35.0 3.25e-01 80.9% 52.0%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 36.0 3.42e-01 72.3% 77.2%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 44.0 3.50e-01 94.7% 90.7%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 45.0 3.35e-01 97.9% 87.1%
6j7xC01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.51 42.0 3.77e-01 92.6% 70.7%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 41.0 3.28e-01 85.1% 82.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014685 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.79 37.0 4.38e-01 84.0% 64.6%
5081796 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.78 35.0 2.81e-01 84.0% 24.1%
4188283 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.74 26.0 2.86e-01 73.4% 36.3%
4954483 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.72 36.0 3.28e-01 83.0% 37.6%
3989333 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.70 37.0 4.46e-01 97.9% 80.0%
5014277 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.68 35.0 3.71e-01 84.0% 55.3%
1171961 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.67 30.0 3.65e-01 83.0% 61.9%
3588455 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.67 38.0 4.30e-01 97.9% 74.3%
3590243 6044.1.1.1 a+b three layers › DUF1827-like › DUF1827-like › DUF1827-like › DUF1827 0.65 51.0 4.95e-01 84.0% 81.0%
3926459 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 43.0 4.19e-01 79.8% 61.0%
3367441 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 45.0 4.47e-01 85.1% 69.7%
3519579 295.1.1.20 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Intu_longin_3 0.63 40.0 4.27e-01 98.9% 73.8%
5035423 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 43.0 4.56e-01 100.0% 78.8%
1170462 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.62 31.0 3.78e-01 81.9% 73.8%
3283603 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 44.0 4.65e-01 85.1% 82.4%
5026277 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 38.0 4.51e-01 83.0% 100.0%
3890932 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.60 53.0 3.66e-01 100.0% 62.9%
4259063 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.60 49.0 3.44e-01 91.5% 61.6%
5045959 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.90e-01 100.0% 60.9%
3768859 206.1.1.17 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kdo 0.59 48.0 3.60e-01 90.4% 44.4%
184900 6044.1.1.1 a+b three layers › DUF1827-like › DUF1827-like › DUF1827-like › DUF1827 0.59 52.0 5.10e-01 98.9% 98.0%
5074455 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 40.0 3.83e-01 100.0% 60.9%
3479716 3459.1.1.0 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.58 34.0 3.60e-01 97.9% 64.7%
3280245 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.58 36.0 3.46e-01 85.1% 54.3%
5027390 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.57 50.0 3.58e-01 96.8% 43.2%
3584281 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.57 51.0 3.59e-01 98.9% 74.8%
5072371 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 3.87e-01 100.0% 68.0%
3739528 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.56 38.0 2.96e-01 71.3% 37.6%
3789660 897.1.1.0 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.55 38.0 3.05e-01 70.2% 71.8%
4342877 10.1.1.7 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_11 0.55 42.0 3.29e-01 83.0% 88.6%
4027918 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.55 38.0 3.28e-01 73.4% 85.0%
4947581 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 36.0 3.51e-01 100.0% 59.1%
4989818 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.54 48.0 3.69e-01 100.0% 81.8%
3222216 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 36.0 4.04e-01 80.9% 90.0%
3981185 241.1.1.25 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF27378 0.54 44.0 4.14e-01 98.9% 71.3%
4240494 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.54 45.0 3.12e-01 94.7% 55.9%
3874376 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.54 38.0 2.82e-01 83.0% 32.7%
4937958 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.53 41.0 2.87e-01 83.0% 24.0%
3856809 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 36.0 3.75e-01 81.9% 74.4%
3289567 881.1.1.15 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.52 41.0 3.65e-01 84.0% 73.3%
3208802 3435.1.1.3 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-L 0.52 43.0 3.18e-01 92.6% 95.9%
4029635 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.52 45.0 4.00e-01 95.7% 71.7%
4024234 2003.1.5.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase 0.52 44.0 3.01e-01 94.7% 69.1%
7054 881.2.1.1 a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like › DUF3242 0.52 40.0 3.65e-01 84.0% 70.9%
3242741 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.51 41.0 3.01e-01 87.2% 41.4%
3953943 9.27.1.1 beta barrels › Lipocalins/Streptavidin › LpqH › LpqH › Myco_19_kDa 0.51 39.0 3.70e-01 80.9% 68.2%
3273037 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 38.0 2.70e-01 81.9% 23.9%
3368132 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.51 39.0 3.63e-01 83.0% 82.5%
5051542 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 41.0 3.31e-01 89.4% 51.6%
1171964 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.51 31.0 3.82e-01 90.4% 100.0%
3987244 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.51 40.0 2.99e-01 90.4% 61.1%
3682604 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 2.56e-01 96.8% 20.5%
5044629 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 40.0 3.80e-01 88.3% 81.7%
5036807 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.50 38.0 3.88e-01 91.5% 82.1%