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JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00040

Bact-Vir

JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00040

Identity

Kingdom:
phage

Quality

72.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-63
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z0uA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.70 53.0 4.03e-01 84.3% 54.7%
3fdwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.67 50.0 3.75e-01 82.4% 51.5%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 54.0 4.26e-01 100.0% 44.2%
3sokB00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.64 53.0 3.99e-01 100.0% 68.3%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.63 41.0 4.41e-01 98.0% 87.2%
1ej6B00 3.90.1830.10 Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 0.63 36.0 1.96e-01 86.3% 2.6%
4bzyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 48.0 3.66e-01 84.3% 55.8%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 46.0 2.91e-01 100.0% 15.0%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.60 47.0 3.52e-01 100.0% 33.1%
3d3lA02 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 44.0 3.87e-01 84.3% 51.2%
1chmA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.60 51.0 3.30e-01 100.0% 43.1%
1iowA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 45.0 3.26e-01 84.3% 58.4%
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.59 43.0 3.56e-01 94.1% 42.1%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 45.0 4.14e-01 100.0% 64.2%
7x4pA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 51.0 3.63e-01 100.0% 63.1%
1dxlA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.58 42.0 3.27e-01 84.3% 33.9%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 3.89e-01 100.0% 75.5%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.80e-01 100.0% 15.7%
5dmxB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 42.0 3.04e-01 84.3% 44.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 43.0 3.97e-01 100.0% 64.2%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 44.0 3.18e-01 90.2% 66.0%
1ik3A04 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.52e-01 100.0% 75.4%
4fe9A01 2.60.40.3640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.19e-01 82.4% 59.2%
3v98A03 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 48.0 3.72e-01 100.0% 71.6%
6fhvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.51e-01 86.3% 68.4%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 45.0 4.18e-01 100.0% 71.9%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 37.0 3.10e-01 100.0% 37.4%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 43.0 4.01e-01 100.0% 68.2%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 43.0 3.82e-01 100.0% 60.3%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 43.0 4.01e-01 100.0% 68.2%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 37.0 2.59e-01 90.2% 19.2%
2h41A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.39e-01 84.3% 60.0%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 44.0 4.05e-01 100.0% 69.7%
2l0cA00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 41.0 3.36e-01 84.3% 47.4%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 3.54e-01 100.0% 88.0%
4hd5A01 2.60.40.3760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.34e-01 84.3% 66.0%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 45.0 2.90e-01 100.0% 19.3%
1e4eB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 40.0 2.92e-01 84.3% 60.9%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.05e-01 100.0% 26.3%
3wnzA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 42.0 3.09e-01 88.2% 61.8%
3op2A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 39.0 3.01e-01 84.3% 35.6%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.22e-01 84.3% 64.4%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 43.0 3.80e-01 100.0% 61.0%
3mezD00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.53 43.0 3.33e-01 90.2% 58.9%
3c12A02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.36e-01 84.3% 75.9%
3lh4A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.51e-01 100.0% 75.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 3.89e-01 90.2% 85.5%
5e6zC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.12e-01 84.3% 53.8%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.43e-01 96.1% 56.7%
2azpA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 44.0 3.11e-01 100.0% 44.7%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 44.0 3.19e-01 100.0% 93.2%
5icuA00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 38.0 3.12e-01 86.3% 60.8%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1191474 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.77 55.0 4.77e-01 100.0% 50.0%
4273211 108.1.1.115 alpha arrays › EF-hand › EF-hand-related › EF-hand › PF30551 0.69 42.0 2.53e-01 84.3% 9.3%
3738789 316.1.1.25 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 0.68 45.0 2.99e-01 84.3% 17.5%
3926830 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.66 57.0 4.45e-01 100.0% 45.5%
4272986 274.1.1.1 a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pilin 0.65 54.0 4.05e-01 100.0% 75.7%
3646092 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.63 46.0 3.46e-01 84.3% 30.4%
3212468 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.62 55.0 4.42e-01 100.0% 52.0%
3579362 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.62 53.0 4.19e-01 100.0% 47.3%
3290377 5.1.3.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.62 52.0 3.35e-01 100.0% 20.4%
3791416 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.61 45.0 4.08e-01 88.2% 58.6%
5017819 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 40.0 2.77e-01 92.2% 18.0%
3930385 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 44.0 3.56e-01 84.3% 57.3%
3309702 207.1.1.43 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 0.59 43.0 2.53e-01 84.3% 14.1%
5078695 7525.1.1.1 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.59 42.0 3.12e-01 80.4% 95.5%
3236050 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.59 51.0 4.03e-01 100.0% 46.4%
4972571 7525.1.1.1 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.59 42.0 3.10e-01 80.4% 95.5%
4153379 2492.1.1.18 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.58 45.0 3.35e-01 100.0% 31.4%
4438753 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.58 50.0 3.17e-01 100.0% 24.1%
3624651 7528.1.1.5 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › AMG1_II 0.57 49.0 3.75e-01 100.0% 41.7%
1556157 6029.1.1.1 beta meanders › Hemin uptake protein hemP › Hemin uptake protein hemP › Hemin uptake protein hemP › hemP 0.57 37.0 3.88e-01 94.1% 73.8%
2529926 11.1.4.36 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.57 48.0 4.05e-01 100.0% 86.0%
5000848 802.1.1.1 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.57 43.0 3.11e-01 84.3% 30.0%
3917795 5.1.4.173 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.57 48.0 2.94e-01 100.0% 17.5%
4139173 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 44.0 3.49e-01 84.3% 55.0%
3878850 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 45.0 3.98e-01 100.0% 60.0%
3239548 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.56 45.0 3.58e-01 100.0% 42.3%
4623713 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.56 46.0 3.39e-01 100.0% 32.7%
4824506 809.1.1.1 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.56 45.0 3.66e-01 100.0% 46.2%
4999001 206.1.3.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.56 42.0 2.67e-01 84.3% 29.3%
4411405 206.1.3.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C 0.56 42.0 3.08e-01 84.3% 53.1%
5059830 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.55 41.0 3.54e-01 86.3% 65.6%
1700100 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.55 44.0 4.20e-01 100.0% 75.4%
3927505 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.55 40.0 3.43e-01 78.4% 97.5%
3481588 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 41.0 3.14e-01 90.2% 78.6%
5062120 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 44.0 3.64e-01 94.1% 61.9%
4547017 109.3.1.99 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2+Ank_5 0.54 36.0 2.42e-01 84.3% 14.7%
3869511 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 43.0 3.57e-01 100.0% 48.4%
3536619 708.1.1.14 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › ZSWIM3_N 0.54 44.0 3.66e-01 100.0% 65.7%
4011051 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 44.0 3.08e-01 90.2% 93.1%
169076 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.54 45.0 2.90e-01 100.0% 19.5%
3859059 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.53 43.0 3.57e-01 100.0% 51.1%
3927227 913.1.1.1 few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › HRM 0.53 45.0 3.67e-01 100.0% 48.6%
3325087 1.1.1.28 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.53 42.0 2.58e-01 94.1% 89.1%
1779557 11.1.1.177 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FlgD_ig 0.53 37.0 3.38e-01 84.3% 77.6%
3953993 298.3.1.3 a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › MmgE_PrpD_C 0.53 39.0 2.85e-01 84.3% 74.2%
3444245 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.52 45.0 4.00e-01 100.0% 94.7%
3571191 913.1.1.0 few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) 0.52 44.0 4.04e-01 100.0% 74.3%
3290105 4011.1.1.0 beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins 0.52 44.0 4.13e-01 100.0% 96.9%
3958877 298.3.1.0 a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like 0.52 38.0 2.66e-01 84.3% 58.1%
4160795 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.50 44.0 3.19e-01 100.0% 49.7%
5010371 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.50 38.0 3.06e-01 84.3% 70.5%