Back to structures

JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00135

Bact-Vir

JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00135

Identity

Kingdom:
phage

Quality

87.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-146
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3thxA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.57 38.0 3.62e-01 82.4% 57.0%
2yhwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 40.0 4.05e-01 75.4% 99.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3925096 7579.1.1.127 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Abhydrolase_3 0.59 45.0 3.34e-01 80.3% 82.4%
5064060 896.1.1.4 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 0.57 28.0 3.74e-01 80.3% 91.4%
3629460 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 41.0 3.33e-01 73.9% 98.9%
4208333 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 32.0 3.51e-01 79.6% 72.5%
3599915 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 47.0 4.19e-01 98.6% 96.5%
3602236 284.1.3.3 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 0.51 30.0 3.57e-01 82.4% 86.3%