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JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00158
Bact-VirJBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00158
Identity
- Kingdom:
- phage
Quality
85.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-86
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13711.12 best | DUF4160 | 43.5 | 3.90e-11 | 86.3% | 92.3% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d3rA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 35.0 | 3.41e-01 | 87.7% | 45.8% |
| 4npsA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 34.0 | 3.79e-01 | 84.9% | 65.5% |
| 3wz2B00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.62 | 49.0 | 3.48e-01 | 86.3% | 89.0% |
| 1zkpC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.62 | 51.0 | 3.54e-01 | 90.4% | 98.0% |
| 4rfbA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 36.0 | 3.66e-01 | 93.2% | 57.3% |
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 32.0 | 3.88e-01 | 86.3% | 82.2% |
| 2fmlA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.60 | 48.0 | 3.76e-01 | 90.4% | 88.4% |
| 2cs7A00 | 3.10.50.90 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.59 | 40.0 | 4.40e-01 | 97.3% | 94.5% |
| 5i4dA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 39.0 | 3.90e-01 | 72.6% | 92.1% |
| 4cbvA02 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.56 | 38.0 | 3.32e-01 | 100.0% | 44.9% |
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.55 | 35.0 | 3.90e-01 | 86.3% | 83.1% |
| 3zm6A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.52 | 39.0 | 2.81e-01 | 80.8% | 55.6% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 33.0 | 3.50e-01 | 91.8% | 75.0% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 36.0 | 3.61e-01 | 80.8% | 70.3% |
| 6o5cA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.52 | 40.0 | 4.01e-01 | 82.2% | 85.5% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 38.0 | 3.45e-01 | 79.5% | 86.7% |
| 2bzyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 28.0 | 3.01e-01 | 75.3% | 56.5% |
| 1pxfA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 37.0 | 3.30e-01 | 76.7% | 73.9% |
| 2g3aA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 37.0 | 3.38e-01 | 78.1% | 56.2% |
| 1vx7H01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.51 | 42.0 | 4.03e-01 | 94.5% | 77.6% |
| 2jaeA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 38.0 | 2.92e-01 | 82.2% | 81.1% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 31.0 | 3.25e-01 | 87.7% | 66.7% |
| 5zx8A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.50 | 41.0 | 3.06e-01 | 89.0% | 45.7% |
| 3fbxA00 | 3.60.60.30 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › | 0.50 | 40.0 | 2.49e-01 | 93.2% | 86.0% |
| 3r1kA03 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.50 | 39.0 | 3.60e-01 | 84.9% | 95.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4974921 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 33.0 | 3.39e-01 | 80.8% | 45.7% |
| 4182977 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.62 | 35.0 | 3.86e-01 | 78.1% | 68.3% |
| 4436860 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 33.0 | 3.43e-01 | 91.8% | 56.9% |
| 6256 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.59 | 48.0 | 3.58e-01 | 91.8% | 72.8% |
| 3522979 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.59 | 32.0 | 3.73e-01 | 72.6% | 80.0% |
| 3409718 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.58 | 36.0 | 4.17e-01 | 83.6% | 88.7% |
| 3518931 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.55 | 33.0 | 3.99e-01 | 82.2% | 95.6% |
| 3992786 | 11.1.1.1176 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-prop_Rol-3 | 0.55 | 40.0 | 2.67e-01 | 95.9% | 18.7% |
| 4104821 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.55 | 38.0 | 3.78e-01 | 82.2% | 69.3% |
| 5058484 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.55 | 38.0 | 3.89e-01 | 75.3% | 77.1% |
| 3719738 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 43.0 | 4.25e-01 | 94.5% | 83.7% |
| 3925754 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.54 | 44.0 | 3.77e-01 | 100.0% | 52.6% |
| 3861121 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 45.0 | 4.01e-01 | 98.6% | 94.8% |
| 540 | 4.1.1.8 ↗ | beta barrels › SH3 › SH3 › SH3 › IN_DBD_C | 0.54 | 34.0 | 4.01e-01 | 79.5% | 97.9% |
| None | — | 0.53 | 45.0 | 4.11e-01 | 100.0% | 90.5% | |
| 134018 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.53 | 37.0 | 2.92e-01 | 74.0% | 44.4% |
| 3271042 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 41.0 | 3.79e-01 | 90.4% | 100.0% |
| 4995694 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 33.0 | 3.76e-01 | 78.1% | 89.1% |
| 5064094 | 2.14.1.0 ↗ | beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like | 0.51 | 32.0 | 3.65e-01 | 75.3% | 92.0% |
| 4527507 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.50 | 43.0 | 3.62e-01 | 97.3% | 70.0% |