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JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00196
Bact-VirJBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00196
Identity
- Kingdom:
- phage
Quality
87.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-79
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y9wA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.83 | 44.0 | 3.94e-01 | 100.0% | 39.4% |
| 1q2yA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.76 | 40.0 | 3.20e-01 | 100.0% | 28.6% |
| 3juwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.73 | 40.0 | 3.07e-01 | 100.0% | 24.6% |
| 3dp7A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.70 | 45.0 | 3.47e-01 | 100.0% | 31.1% |
| 2x7bA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.69 | 40.0 | 3.21e-01 | 100.0% | 28.8% |
| 3evzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.68 | 42.0 | 3.25e-01 | 100.0% | 28.9% |
| 4m1xD00 | 3.30.1360.240 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.67 | 41.0 | 4.23e-01 | 100.0% | 65.3% |
| 2lxrA00 | 3.30.110.40 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain | 0.67 | 41.0 | 4.20e-01 | 100.0% | 63.2% |
| 4lecA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 40.0 | 2.93e-01 | 100.0% | 24.3% |
| 2crqA01 | 3.30.110.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain | 0.60 | 42.0 | 4.06e-01 | 100.0% | 66.3% |
| 1tigA00 | 3.30.110.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain | 0.58 | 40.0 | 3.91e-01 | 100.0% | 64.8% |
| 4r3aA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 50.0 | 3.86e-01 | 100.0% | 60.2% |
| 2xrnA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.55 | 49.0 | 3.77e-01 | 100.0% | 67.2% |
| 3bzbB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 38.0 | 2.85e-01 | 100.0% | 29.0% |
| 1xebA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 40.0 | 3.20e-01 | 78.2% | 79.2% |
| 4mtlA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 38.0 | 2.85e-01 | 75.6% | 80.3% |
| 1tf1B00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 47.0 | 3.62e-01 | 100.0% | 72.5% |
| 2ykfA01 | 3.30.450.280 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 46.0 | 4.01e-01 | 100.0% | 64.1% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.53 | 38.0 | 3.17e-01 | 100.0% | 44.4% |
| 3gwzA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 44.0 | 3.04e-01 | 100.0% | 28.4% |
| 5svgC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 45.0 | 3.98e-01 | 100.0% | 93.4% |
| 3wnzA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 42.0 | 3.48e-01 | 89.7% | 84.0% |
| 3eeqB03 | 3.30.420.180 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › CobE/GbiG C-terminal domain | 0.51 | 46.0 | 4.15e-01 | 100.0% | 98.1% |
| 3ng0A02 | 3.30.590.10 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain | 0.51 | 37.0 | 2.53e-01 | 80.8% | 69.6% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3263964 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.80 | 43.0 | 4.60e-01 | 100.0% | 60.0% |
| 3738229 | 213.1.1.31 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 | 0.79 | 41.0 | 3.23e-01 | 100.0% | 26.0% |
| 3800585 | 213.1.1.31 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 | 0.72 | 39.0 | 3.01e-01 | 100.0% | 24.2% |
| 4998381 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.68 | 41.0 | 4.26e-01 | 100.0% | 64.4% |
| 4963299 | 304.24.1.43 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PF25930 | 0.68 | 41.0 | 3.48e-01 | 100.0% | 37.6% |
| 5042500 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.66 | 40.0 | 3.19e-01 | 100.0% | 30.1% |
| 4975576 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.65 | 41.0 | 3.93e-01 | 100.0% | 55.6% |
| 5013279 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.60 | 38.0 | 3.91e-01 | 100.0% | 66.7% |
| 3779152 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.60 | 53.0 | 3.91e-01 | 100.0% | 50.2% |
| 4243831 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.60 | 42.0 | 4.02e-01 | 100.0% | 62.4% |
| 4660214 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.60 | 42.0 | 4.07e-01 | 100.0% | 65.2% |
| 4591093 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.59 | 43.0 | 3.58e-01 | 100.0% | 44.4% |
| 3500531 | 5090.1.1.8 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF | 0.59 | 51.0 | 3.39e-01 | 100.0% | 80.3% |
| 4028890 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.58 | 40.0 | 2.58e-01 | 73.1% | 63.5% |
| 4677322 | 306.10.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › KCTD1-15_CTD | 0.58 | 53.0 | 4.57e-01 | 100.0% | 82.5% |
| 4647731 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.58 | 41.0 | 4.19e-01 | 98.7% | 80.0% |
| 3731565 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.57 | 41.0 | 3.80e-01 | 100.0% | 59.0% |
| 3379698 | 321.1.1.0 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase | 0.57 | 42.0 | 3.04e-01 | 82.1% | 85.8% |
| 3205906 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.56 | 42.0 | 3.98e-01 | 100.0% | 65.3% |
| 4429287 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.56 | 37.0 | 2.83e-01 | 70.5% | 82.9% |
| 2388793 | 2003.1.5.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 | 0.55 | 38.0 | 2.67e-01 | 73.1% | 63.5% |
| 3467248 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 35.0 | 3.51e-01 | 100.0% | 64.6% |
| 3218243 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 42.0 | 4.12e-01 | 100.0% | 76.5% |
| 3223282 | 223.2.1.22 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin | 0.54 | 46.0 | 3.67e-01 | 100.0% | 52.4% |
| 5034050 | 876.1.1.10 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF1015 | 0.53 | 47.0 | 3.38e-01 | 100.0% | 42.7% |
| 5009364 | 4262.1.1.0 ↗ | a/b three-layered sandwiches › CobE/CbiG C-terminal domain-like › CobE/CbiG C-terminal domain-like › CobE/CbiG C-terminal domain-like | 0.53 | 48.0 | 4.42e-01 | 100.0% | 97.0% |
| 4301888 | 213.1.1.57 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › BCCIP | 0.52 | 43.0 | 3.08e-01 | 100.0% | 31.1% |
| 3579209 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 38.0 | 3.30e-01 | 100.0% | 50.0% |
| 5056441 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.52 | 35.0 | 2.71e-01 | 70.5% | 81.3% |
| 3883400 | 11.1.1.873 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_CNNM4_N | 0.52 | 41.0 | 3.55e-01 | 87.2% | 74.4% |
| 5025532 | 4262.1.1.1 ↗ | a/b three-layered sandwiches › CobE/CbiG C-terminal domain-like › CobE/CbiG C-terminal domain-like › CobE/CbiG C-terminal domain-like › CbiG_C | 0.51 | 45.0 | 3.88e-01 | 98.7% | 97.6% |
| 3742967 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.51 | 37.0 | 2.92e-01 | 79.5% | 80.6% |
| 10974 | 4262.1.1.1 ↗ | a/b three-layered sandwiches › CobE/CbiG C-terminal domain-like › CobE/CbiG C-terminal domain-like › CobE/CbiG C-terminal domain-like › CbiG_C | 0.51 | 45.0 | 3.97e-01 | 98.7% | 100.0% |
| 5031468 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.51 | 39.0 | 3.20e-01 | 87.2% | 45.0% |