←Back to structures
JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00252
Bact-VirJBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00252
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 130-145_157-172_188-280
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12762.14 best | DDE_Tnp_IS1595 | 72.8 | 4.40e-20 | 98.4% | 88.0% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.75 | 68.0 | 6.37e-01 | 96.0% | 79.9% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.63 | 27.0 | 3.61e-01 | 88.8% | 75.4% |
| 4e19A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 52.0 | 5.08e-01 | 97.6% | 98.5% |
| 1f21A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 50.0 | 4.71e-01 | 97.6% | 92.8% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.55 | 25.0 | 3.43e-01 | 87.2% | 91.2% |
| 5idqB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 41.0 | 3.42e-01 | 82.4% | 86.1% |
| 3zm6A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.52 | 44.0 | 3.64e-01 | 91.2% | 93.7% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 29.0 | 3.63e-01 | 86.4% | 91.9% |
| 1ej2A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 45.0 | 4.11e-01 | 96.8% | 97.0% |
| 3fwzA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 38.0 | 3.70e-01 | 77.6% | 90.0% |
| 8adlB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 41.0 | 3.11e-01 | 87.2% | 96.5% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039143 | 2484.1.1.107 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 | 0.86 | 77.0 | 7.89e-01 | 92.8% | 97.5% |
| 3938498 | 2484.1.1.107 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 | 0.84 | 64.0 | 7.30e-01 | 83.2% | 100.0% |
| 3902211 | 2484.1.1.107 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 | 0.83 | 80.0 | 6.21e-01 | 100.0% | 59.2% |
| 3924799 | 2484.1.1.107 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 | 0.82 | 79.0 | 7.14e-01 | 100.0% | 81.9% |
| 4929448 | 2484.1.1.107 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 | 0.82 | 71.0 | 6.72e-01 | 97.6% | 77.9% |
| 4001973 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.76 | 72.0 | 7.16e-01 | 100.0% | 95.4% |
| 3797547 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.76 | 72.0 | 6.63e-01 | 100.0% | 83.2% |
| 3623868 | 2484.1.1.107 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 | 0.76 | 72.0 | 6.61e-01 | 100.0% | 83.2% |
| 3724785 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.72 | 54.0 | 4.69e-01 | 79.2% | 95.8% |
| 1687158 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.70 | 55.0 | 4.99e-01 | 83.2% | 93.5% |
| 3940409 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.69 | 64.0 | 4.24e-01 | 100.0% | 86.5% |
| 4408649 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.69 | 56.0 | 4.61e-01 | 87.2% | 75.1% |
| 3562464 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.69 | 62.0 | 4.23e-01 | 100.0% | 97.4% |
| 4984424 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.67 | 59.0 | 4.18e-01 | 97.6% | 83.0% |
| 5071365 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.66 | 60.0 | 4.24e-01 | 97.6% | 80.8% |
| 3934415 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.66 | 55.0 | 5.42e-01 | 89.6% | 97.8% |
| 5063764 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.65 | 55.0 | 4.82e-01 | 90.4% | 88.1% |
| 4304382 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.64 | 52.0 | 4.61e-01 | 87.2% | 76.1% |
| 5011661 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.64 | 55.0 | 4.87e-01 | 96.8% | 97.4% |
| 3605420 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.63 | 55.0 | 4.43e-01 | 97.6% | 90.4% |
| 4974213 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.62 | 54.0 | 4.70e-01 | 95.2% | 87.2% |
| 4002282 | 2484.1.1.15 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 | 0.62 | 50.0 | 4.38e-01 | 86.4% | 72.6% |
| 4383357 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.59 | 51.0 | 4.97e-01 | 94.4% | 99.3% |
| None | — | 0.57 | 46.0 | 3.23e-01 | 85.6% | 47.9% | |
| 4457744 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.56 | 48.0 | 3.69e-01 | 96.8% | 85.3% |
| 2623870 | 2484.1.1.44 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pox_A22 | 0.56 | 48.0 | 4.59e-01 | 95.2% | 85.9% |
| 3511043 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.56 | 40.0 | 4.15e-01 | 92.0% | 79.7% |
| 4130753 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.56 | 41.0 | 2.98e-01 | 76.0% | 76.6% |
| 3253359 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 43.0 | 3.16e-01 | 84.8% | 92.9% |
| 4254174 | 4099.1.1.22 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P | 0.52 | 35.0 | 3.31e-01 | 97.6% | 57.9% |
| 3627039 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.52 | 35.0 | 2.78e-01 | 88.0% | 35.8% |
| 5029487 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.51 | 36.0 | 3.08e-01 | 73.6% | 88.3% |
| 3819309 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.50 | 31.0 | 3.68e-01 | 92.8% | 91.8% |
| 3170704 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 38.0 | 2.69e-01 | 80.8% | 85.6% |
| 3413259 | 883.1.1.3 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP | 0.50 | 40.0 | 3.34e-01 | 87.2% | 88.9% |