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JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00264
Bact-VirJBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00264
Identity
- Kingdom:
- phage
Quality
67.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-87
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4y5jA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.65 | 52.0 | 3.76e-01 | 87.3% | 46.3% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.61 | 52.0 | 4.59e-01 | 97.5% | 69.4% |
| 1aqcB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 44.0 | 3.86e-01 | 81.0% | 94.3% |
| 2kr0A01 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.59 | 44.0 | 3.98e-01 | 82.3% | 95.6% |
| 2janA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.58 | 45.0 | 4.18e-01 | 84.8% | 98.0% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.57 | 41.0 | 3.77e-01 | 75.9% | 86.7% |
| 5dikA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 49.0 | 4.46e-01 | 98.7% | 76.8% |
| 4g9qA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 49.0 | 3.58e-01 | 100.0% | 84.0% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 44.0 | 4.08e-01 | 88.6% | 100.0% |
| 3wpwA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.57 | 42.0 | 3.45e-01 | 79.7% | 79.2% |
| 2kvsA00 | 1.10.150.260 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like | 0.56 | 42.0 | 4.23e-01 | 86.1% | 80.0% |
| 2l1sA00 | 3.10.450.160 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › inner membrane protein cigr | 0.55 | 32.0 | 3.22e-01 | 86.1% | 55.4% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.55 | 38.0 | 3.67e-01 | 100.0% | 62.4% |
| 7lgjA01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.54 | 42.0 | 3.14e-01 | 96.2% | 30.7% |
| 4arnA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.54 | 47.0 | 3.26e-01 | 100.0% | 41.5% |
| 6eotD01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.53 | 47.0 | 2.87e-01 | 100.0% | 48.9% |
| 5gaeG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.53 | 36.0 | 3.63e-01 | 86.1% | 69.1% |
| 4bv4R00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.53 | 47.0 | 2.94e-01 | 100.0% | 26.6% |
| 3ldtA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.52 | 46.0 | 3.78e-01 | 98.7% | 66.0% |
| 2ymsC00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 41.0 | 4.22e-01 | 88.6% | 89.3% |
| 2aujD03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 34.0 | 3.73e-01 | 74.7% | 85.5% |
| 2ntkB00 | 3.60.20.20 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like | 0.51 | 39.0 | 3.02e-01 | 84.8% | 82.2% |
| 2xzhA00 | 2.130.10.110 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain | 0.51 | 43.0 | 2.79e-01 | 92.4% | 31.0% |
| 1pbyB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 38.0 | 2.50e-01 | 79.7% | 20.8% |
| 1bucA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 42.0 | 3.72e-01 | 94.9% | 78.9% |
| 4zovB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 41.0 | 2.64e-01 | 88.6% | 18.5% |
| 1iwlA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.50 | 43.0 | 3.41e-01 | 100.0% | 55.9% |
| 2czrA01 | 3.40.1350.70 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain | 0.50 | 37.0 | 3.44e-01 | 98.7% | 60.4% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5070299 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 30.0 | 4.29e-01 | 72.2% | 72.5% |
| 3493489 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.69 | 43.0 | 5.02e-01 | 94.9% | 98.0% |
| 5012208 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.60 | 41.0 | 3.99e-01 | 72.2% | 80.0% |
| 3786078 | 109.4.1.1764 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 | 0.59 | 44.0 | 2.67e-01 | 78.5% | 29.1% |
| 4119222 | 375.1.1.135 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Lar_restr_allev | 0.58 | 35.0 | 4.30e-01 | 86.1% | 96.0% |
| 4517523 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.57 | 42.0 | 3.94e-01 | 78.5% | 63.0% |
| 3185844 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 36.0 | 3.76e-01 | 93.7% | 70.0% |
| 5035266 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.57 | 46.0 | 4.62e-01 | 98.7% | 89.2% |
| 3924872 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.56 | 39.0 | 2.74e-01 | 72.2% | 59.2% |
| 5033222 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.56 | 42.0 | 3.79e-01 | 78.5% | 61.9% |
| 3783291 | 5.1.4.19 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD | 0.56 | 45.0 | 3.00e-01 | 89.9% | 22.3% |
| 3784394 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 44.0 | 2.71e-01 | 84.8% | 36.7% |
| 4954769 | 2498.2.1.0 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain | 0.55 | 48.0 | 3.88e-01 | 98.7% | 63.2% |
| 3409369 | 207.1.1.141 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5, LRR_8 | 0.55 | 48.0 | 3.28e-01 | 100.0% | 37.7% |
| 4463837 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.55 | 40.0 | 3.68e-01 | 78.5% | 62.9% |
| 3255946 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 37.0 | 3.74e-01 | 84.8% | 70.0% |
| 4975963 | 213.1.1.29 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 | 0.54 | 45.0 | 3.27e-01 | 97.5% | 44.7% |
| 5045511 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.54 | 43.0 | 3.12e-01 | 96.2% | 29.6% |
| 3639374 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 44.0 | 2.89e-01 | 89.9% | 24.5% |
| 3560257 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.53 | 44.0 | 2.81e-01 | 88.6% | 20.3% |
| 4974477 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.53 | 37.0 | 3.57e-01 | 73.4% | 77.8% |
| 3743579 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.53 | 43.0 | 2.84e-01 | 88.6% | 22.6% |
| 3263889 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 44.0 | 2.72e-01 | 93.7% | 29.6% |
| 3598746 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 44.0 | 2.81e-01 | 92.4% | 41.8% |
| 4484797 | 5.1.4.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 | 0.52 | 43.0 | 2.71e-01 | 88.6% | 19.5% |
| 3516608 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 42.0 | 2.63e-01 | 88.6% | 18.2% |
| 3739291 | 5.1.4.62 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN | 0.51 | 42.0 | 2.82e-01 | 92.4% | 22.5% |
| 3507678 | 5.1.4.319 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st | 0.51 | 42.0 | 2.61e-01 | 88.6% | 19.3% |
| 3672734 | 1.1.1.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD | 0.51 | 40.0 | 3.51e-01 | 83.5% | 91.3% |
| 3885751 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.51 | 36.0 | 3.47e-01 | 75.9% | 75.8% |
| 3567160 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.51 | 40.0 | 2.45e-01 | 84.8% | 19.0% |
| 3849084 | 5.1.11.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 | 0.51 | 44.0 | 2.79e-01 | 100.0% | 27.7% |
| 3591252 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 43.0 | 2.81e-01 | 93.7% | 94.4% |
| 3773428 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 42.0 | 2.52e-01 | 93.7% | 21.9% |
| 3824511 | 1.1.1.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD | 0.51 | 43.0 | 3.66e-01 | 89.9% | 90.8% |
| 3629700 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.50 | 44.0 | 2.86e-01 | 94.9% | 94.6% |
| 3224107 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 41.0 | 2.58e-01 | 88.6% | 22.4% |