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JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00286
Bact-VirJBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00286
Identity
- Kingdom:
- phage
Quality
66.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-63
Domain cluster:
rep: CAKLQF020000030.1__CAH1093946.1__SAMEA5780031_03796__00040__D3-56
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22421.2 best | SYY_C-terminal | 38.7 | 1.10e-09 | 85.5% | 57.8% |
| PF01479.31 | S4 | 42.2 | 7.70e-11 | 77.4% | 77.1% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1h3eA03 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.94 | 74.0 | 6.82e-01 | 82.3% | 69.7% |
| 3dh3B01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.90 | 70.0 | 7.18e-01 | 100.0% | 85.0% |
| 2istA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.88 | 71.0 | 6.69e-01 | 85.5% | 73.6% |
| 3hp7A01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.87 | 74.0 | 7.28e-01 | 98.4% | 86.2% |
| 1vioA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.87 | 70.0 | 7.23e-01 | 100.0% | 91.4% |
| 1kskA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.85 | 68.0 | 6.65e-01 | 100.0% | 80.3% |
| 5mmjd02 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.84 | 76.0 | 6.39e-01 | 100.0% | 61.9% |
| 2janA03 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.80 | 74.0 | 6.16e-01 | 100.0% | 61.6% |
| 1vs5D02 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.80 | 72.0 | 6.15e-01 | 96.8% | 86.2% |
| 1dm9A00 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.80 | 66.0 | 5.51e-01 | 100.0% | 53.8% |
| 3kbgA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.77 | 63.0 | 5.75e-01 | 100.0% | 67.9% |
| 5ldaB00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.73 | 50.0 | 5.18e-01 | 87.1% | 77.2% |
| 2xzmW01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.72 | 60.0 | 4.86e-01 | 100.0% | 49.2% |
| 1p9kA00 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.71 | 54.0 | 5.07e-01 | 100.0% | 67.1% |
| 3rpfC00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.65 | 51.0 | 4.88e-01 | 93.5% | 73.6% |
| 4wiqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 50.0 | 4.17e-01 | 100.0% | 64.2% |
| 2petA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 49.0 | 3.99e-01 | 100.0% | 80.2% |
| 2conA00 | 6.20.210.10 | Special › Other non-globular › Herpes Virus-1 › Nin one binding (NOB1), Zn-ribbon-like | 0.54 | 38.0 | 3.51e-01 | 74.2% | 62.0% |
| 3v6oB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 3.89e-01 | 100.0% | 74.0% |
| 6tnyB02 | 2.40.50.430 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 42.0 | 3.63e-01 | 100.0% | 87.5% |
| 1ep5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 35.0 | 3.24e-01 | 85.5% | 54.7% |
ECOD (100)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4989485 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.96 | 77.0 | 7.89e-01 | 83.9% | 86.7% |
| 5023885 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.94 | 76.0 | 7.54e-01 | 100.0% | 81.5% |
| 4054669 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.94 | 72.0 | 7.98e-01 | 80.6% | 100.0% |
| 4942183 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.93 | 77.0 | 5.44e-01 | 87.1% | 33.9% |
| 3957594 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.93 | 77.0 | 6.80e-01 | 87.1% | 63.5% |
| 4655808 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.92 | 78.0 | 6.87e-01 | 100.0% | 65.5% |
| 3345695 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.92 | 74.0 | 5.71e-01 | 96.8% | 42.4% |
| 4311996 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.91 | 77.0 | 7.20e-01 | 100.0% | 74.3% |
| 3363592 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.91 | 75.0 | 8.01e-01 | 100.0% | 98.2% |
| 4225898 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.91 | 78.0 | 6.86e-01 | 100.0% | 65.9% |
| 5036408 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.90 | 77.0 | 5.54e-01 | 90.3% | 37.4% |
| 4069286 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.90 | 74.0 | 7.06e-01 | 100.0% | 77.1% |
| 4354435 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.90 | 79.0 | 7.33e-01 | 100.0% | 77.0% |
| 3597209 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.90 | 78.0 | 5.41e-01 | 91.9% | 36.1% |
| 3838526 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.90 | 75.0 | 7.21e-01 | 100.0% | 78.6% |
| 3388357 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.90 | 72.0 | 7.62e-01 | 87.1% | 96.4% |
| 5030257 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.89 | 78.0 | 5.35e-01 | 100.0% | 30.8% |
| 4258424 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.89 | 78.0 | 7.29e-01 | 100.0% | 77.0% |
| 4886864 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.89 | 75.0 | 5.16e-01 | 100.0% | 29.9% |
| 4640693 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.89 | 76.0 | 5.71e-01 | 91.9% | 42.1% |
| 3989463 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.89 | 70.0 | 6.24e-01 | 100.0% | 61.2% |
| 6218 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.89 | 75.0 | 6.81e-01 | 100.0% | 69.1% |
| 3712758 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.88 | 73.0 | 5.77e-01 | 100.0% | 47.0% |
| 3977788 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.88 | 71.0 | 6.64e-01 | 85.5% | 70.7% |
| 4424496 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.88 | 75.0 | 7.00e-01 | 100.0% | 74.7% |
| 1555668 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.88 | 76.0 | 6.28e-01 | 100.0% | 55.3% |
| 4649306 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.88 | 75.0 | 6.76e-01 | 100.0% | 70.0% |
| 4348982 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.87 | 72.0 | 6.81e-01 | 100.0% | 75.3% |
| 6222 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.87 | 70.0 | 7.23e-01 | 100.0% | 91.4% |
| 4479416 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.86 | 74.0 | 6.73e-01 | 100.0% | 71.2% |
| 4371983 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.86 | 74.0 | 6.71e-01 | 100.0% | 71.2% |
| 4598810 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.86 | 68.0 | 7.22e-01 | 100.0% | 96.4% |
| 1919543 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.86 | 75.0 | 7.17e-01 | 100.0% | 81.7% |
| 4246558 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.86 | 70.0 | 6.53e-01 | 87.1% | 72.0% |
| 4343727 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.85 | 70.0 | 6.70e-01 | 87.1% | 77.1% |
| 3968798 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.85 | 67.0 | 7.06e-01 | 100.0% | 94.5% |
| 4513460 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.85 | 74.0 | 6.56e-01 | 100.0% | 68.2% |
| 3308037 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.84 | 74.0 | 4.91e-01 | 100.0% | 27.0% |
| 4563326 | 221.1.2.15 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4, SYY_C-terminal | 0.84 | 75.0 | 6.52e-01 | 100.0% | 65.6% |
| 4681372 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.84 | 75.0 | 6.82e-01 | 100.0% | 73.8% |
| 4637141 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.84 | 75.0 | 6.49e-01 | 100.0% | 65.6% |
| 4650909 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.84 | 79.0 | 7.07e-01 | 100.0% | 76.2% |
| 4145377 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.84 | 75.0 | 5.33e-01 | 100.0% | 35.3% |
| 4639963 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.83 | 78.0 | 6.45e-01 | 100.0% | 61.0% |
| 4539522 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.83 | 78.0 | 6.32e-01 | 100.0% | 58.1% |
| 5019299 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.83 | 78.0 | 5.40e-01 | 100.0% | 36.7% |
| 4209983 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.83 | 78.0 | 6.42e-01 | 100.0% | 61.0% |
| 3996926 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.83 | 78.0 | 5.39e-01 | 100.0% | 34.4% |
| 4932746 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.83 | 74.0 | 5.35e-01 | 100.0% | 37.5% |
| 4463258 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.83 | 77.0 | 6.21e-01 | 100.0% | 56.5% |
| 4291462 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.83 | 63.0 | 6.89e-01 | 88.7% | 100.0% |
| 3683149 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.83 | 77.0 | 5.26e-01 | 100.0% | 31.8% |
| 4381886 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.82 | 73.0 | 6.24e-01 | 100.0% | 62.1% |
| 4385812 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.82 | 77.0 | 6.25e-01 | 100.0% | 58.7% |
| 4091239 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.82 | 77.0 | 5.18e-01 | 100.0% | 39.5% |
| 4556019 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.82 | 76.0 | 5.06e-01 | 100.0% | 40.5% |
| 3973069 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.82 | 77.0 | 5.16e-01 | 100.0% | 40.5% |
| 3802847 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.82 | 67.0 | 6.32e-01 | 88.7% | 74.7% |
| 4552602 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.82 | 76.0 | 6.87e-01 | 100.0% | 76.2% |
| 4296239 | 221.1.2.15 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4, SYY_C-terminal | 0.82 | 76.0 | 6.87e-01 | 100.0% | 76.2% |
| 4236969 | 221.1.2.15 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4, SYY_C-terminal | 0.82 | 76.0 | 6.41e-01 | 100.0% | 64.2% |
| 4114172 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.82 | 76.0 | 6.86e-01 | 100.0% | 76.2% |
| 4589398 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.82 | 77.0 | 5.31e-01 | 100.0% | 34.4% |
| 4928594 | 221.1.2.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e | 0.82 | 67.0 | 4.84e-01 | 100.0% | 33.3% |
| 4474817 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.82 | 76.0 | 6.71e-01 | 100.0% | 71.8% |
| 4347860 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.82 | 76.0 | 5.12e-01 | 100.0% | 41.0% |
| 3346507 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.82 | 66.0 | 6.03e-01 | 87.1% | 68.8% |
| 4132665 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.81 | 75.0 | 6.26e-01 | 100.0% | 61.0% |
| 4664945 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.81 | 73.0 | 6.66e-01 | 100.0% | 75.0% |
| 4086120 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.81 | 75.0 | 6.65e-01 | 100.0% | 71.8% |
| 4037359 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.81 | 76.0 | 6.32e-01 | 100.0% | 62.0% |
| 4303870 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.81 | 75.0 | 6.13e-01 | 100.0% | 58.1% |
| 4495690 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.81 | 76.0 | 5.30e-01 | 100.0% | 50.6% |
| 4988890 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.81 | 67.0 | 5.78e-01 | 100.0% | 58.9% |
| 4544433 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.81 | 75.0 | 4.98e-01 | 100.0% | 38.6% |
| 4240121 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.81 | 74.0 | 5.06e-01 | 100.0% | 41.0% |
| 3697710 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.80 | 75.0 | 4.94e-01 | 100.0% | 42.7% |
| 4610806 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.80 | 74.0 | 5.25e-01 | 100.0% | 48.2% |
| 4415510 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.80 | 75.0 | 6.64e-01 | 100.0% | 72.9% |
| 4230087 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.80 | 74.0 | 6.33e-01 | 100.0% | 65.3% |
| 4350669 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.80 | 75.0 | 5.12e-01 | 100.0% | 41.6% |
| 4594972 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.80 | 73.0 | 6.35e-01 | 100.0% | 67.8% |
| 4404012 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.80 | 74.0 | 6.09e-01 | 100.0% | 59.6% |
| 4244261 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.79 | 73.0 | 5.03e-01 | 100.0% | 44.0% |
| 4579240 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.79 | 74.0 | 6.45e-01 | 100.0% | 69.7% |
| 4178101 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.79 | 70.0 | 6.27e-01 | 100.0% | 70.6% |
| 5069060 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.79 | 65.0 | 5.88e-01 | 100.0% | 65.9% |
| 4621232 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.79 | 74.0 | 5.04e-01 | 100.0% | 37.9% |
| 4377119 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.78 | 70.0 | 6.38e-01 | 100.0% | 76.2% |
| 4512477 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.78 | 62.0 | 5.10e-01 | 100.0% | 49.1% |
| 4173735 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.78 | 69.0 | 6.45e-01 | 100.0% | 80.0% |
| 3591034 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.76 | 71.0 | 6.05e-01 | 100.0% | 82.1% |
| 3595814 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.76 | 62.0 | 5.15e-01 | 100.0% | 50.9% |
| 3587128 | 221.1.2.8 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4_2 | 0.76 | 59.0 | 5.70e-01 | 100.0% | 75.7% |
| 3389276 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.76 | 69.0 | 5.93e-01 | 100.0% | 67.0% |
| 4029060 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.76 | 69.0 | 4.79e-01 | 100.0% | 48.4% |
| 4627769 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.75 | 61.0 | 5.42e-01 | 100.0% | 62.2% |
| 3505558 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.75 | 67.0 | 6.04e-01 | 100.0% | 75.3% |
| 3739932 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.73 | 61.0 | 5.07e-01 | 100.0% | 52.7% |
| 4033206 | 221.1.2.8 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4_2 | 0.71 | 59.0 | 5.68e-01 | 100.0% | 82.9% |
D2
high
residues 164-219
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 53.0 | 4.73e-01 | 89.3% | 55.0% |
| 2ia0A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 55.0 | 5.57e-01 | 92.9% | 87.0% |
| 1u2wD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 59.0 | 4.86e-01 | 92.9% | 53.2% |
| 4pcqA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 51.0 | 5.35e-01 | 89.3% | 90.0% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 54.0 | 5.18e-01 | 94.6% | 75.0% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 50.0 | 4.65e-01 | 89.3% | 61.1% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 55.0 | 4.97e-01 | 100.0% | 63.7% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 55.0 | 5.32e-01 | 100.0% | 79.4% |
| 6uglB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 48.0 | 4.79e-01 | 85.7% | 72.4% |
| 1x2mA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 51.0 | 5.18e-01 | 100.0% | 88.9% |
| 1lfuP00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 54.0 | 4.94e-01 | 100.0% | 67.1% |
| 1x2nA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 56.0 | 5.50e-01 | 100.0% | 100.0% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 56.0 | 5.29e-01 | 100.0% | 98.5% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.65 | 45.0 | 4.02e-01 | 71.4% | 55.7% |
| 1s7oB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 50.0 | 4.23e-01 | 100.0% | 48.6% |
| 3nrvB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 55.0 | 4.26e-01 | 98.2% | 45.7% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 47.0 | 4.11e-01 | 94.6% | 50.0% |
| 1b9mB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 49.0 | 4.15e-01 | 89.3% | 81.8% |
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 50.0 | 4.33e-01 | 92.9% | 66.3% |
| 2o7tA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 51.0 | 3.66e-01 | 100.0% | 61.6% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.60 | 48.0 | 4.57e-01 | 92.9% | 73.9% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 43.0 | 4.57e-01 | 82.1% | 97.9% |
| 6el2B01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 45.0 | 4.66e-01 | 85.7% | 95.9% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 50.0 | 4.38e-01 | 98.2% | 65.5% |
| 1wh5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 48.0 | 4.41e-01 | 98.2% | 70.0% |
| 4bxoA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.59 | 50.0 | 4.76e-01 | 94.6% | 86.6% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 49.0 | 3.80e-01 | 100.0% | 52.6% |
| 2imfA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 46.0 | 3.30e-01 | 100.0% | 32.0% |
| 5y9sC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 48.0 | 4.30e-01 | 98.2% | 75.6% |
| 2gloA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 41.0 | 4.15e-01 | 96.4% | 84.7% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 46.0 | 4.35e-01 | 100.0% | 80.6% |
| 3fxqB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 3.89e-01 | 98.2% | 70.0% |
| 5z4zC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 47.0 | 4.05e-01 | 100.0% | 96.6% |
| 5fo5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 43.0 | 3.84e-01 | 98.2% | 70.5% |
| 6g1dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 45.0 | 4.01e-01 | 100.0% | 98.8% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5042936 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 68.0 | 6.54e-01 | 98.2% | 96.9% |
| 3800963 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 67.0 | 5.38e-01 | 98.2% | 93.6% |
| 3642010 | 101.1.2.57 ↗ | alpha arrays › HTH › HTH › winged helix domain › EAP30 | 0.76 | 66.0 | 5.41e-01 | 92.9% | 70.5% |
| 3449129 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 66.0 | 5.39e-01 | 92.9% | 70.5% |
| 3513904 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.71 | 61.0 | 5.36e-01 | 92.9% | 85.0% |
| 3391605 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 56.0 | 5.38e-01 | 92.9% | 95.4% |
| 5073407 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.68 | 60.0 | 5.66e-01 | 100.0% | 91.3% |
| 4964212 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.68 | 59.0 | 5.52e-01 | 100.0% | 91.4% |
| 3943462 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 50.0 | 5.03e-01 | 100.0% | 85.5% |
| 4244028 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.66 | 54.0 | 5.37e-01 | 98.2% | 86.7% |
| 3969666 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.66 | 47.0 | 4.14e-01 | 94.6% | 48.9% |
| 3451551 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.66 | 55.0 | 5.05e-01 | 96.4% | 81.3% |
| 47274 | 101.5.1.1 ↗ | alpha arrays › HTH › C-terminal domain of DFF45/ICAD › C-terminal domain of DFF45/ICAD › DFF-C | 0.65 | 55.0 | 5.34e-01 | 98.2% | 87.1% |
| 3483962 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.65 | 55.0 | 4.80e-01 | 100.0% | 62.2% |
| 4993602 | 632.23.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I | 0.64 | 43.0 | 4.19e-01 | 89.3% | 61.9% |
| 3960509 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.63 | 50.0 | 4.77e-01 | 85.7% | 75.4% |
| 4652526 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.62 | 53.0 | 4.88e-01 | 98.2% | 90.7% |
| 3002 | 102.1.1.16 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 | 0.61 | 46.0 | 4.61e-01 | 87.5% | 86.7% |
| 3218285 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.61 | 52.0 | 4.48e-01 | 100.0% | 62.1% |
| 3172217 | 101.1.2.97 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPA_C | 0.61 | 52.0 | 4.92e-01 | 98.2% | 92.6% |
| 3177199 | 3541.1.1.2 ↗ | beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG29_N | 0.61 | 50.0 | 4.35e-01 | 100.0% | 58.9% |
| 5037673 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.60 | 45.0 | 3.68e-01 | 82.1% | 77.3% |
| 3174911 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.60 | 52.0 | 4.97e-01 | 100.0% | 92.3% |
| 3983219 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.59 | 48.0 | 3.97e-01 | 92.9% | 56.2% |
| 3167535 | 102.1.1.18 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_Ste50p | 0.58 | 47.0 | 4.26e-01 | 94.6% | 77.5% |
| 3590569 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.57 | 46.0 | 4.15e-01 | 92.9% | 73.8% |
| 3942535 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.57 | 50.0 | 4.14e-01 | 100.0% | 83.0% |
| 4137092 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.56 | 45.0 | 4.07e-01 | 92.9% | 73.8% |
| 4570068 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.56 | 45.0 | 3.95e-01 | 92.9% | 65.6% |
| 3942639 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.55 | 44.0 | 3.90e-01 | 92.9% | 65.6% |
| 4982919 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 44.0 | 3.62e-01 | 98.2% | 62.6% |