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JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00301

Bact-Vir

JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00301

Identity

Kingdom:
phage

Quality

93.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-94
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8k1fC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.73 43.0 3.36e-01 80.6% 28.1%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.68 43.0 4.73e-01 97.8% 79.7%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.66 41.0 3.49e-01 93.5% 36.9%
7ahbB01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.66 41.0 4.99e-01 98.9% 100.0%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.66 42.0 4.80e-01 100.0% 87.1%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.66 36.0 4.10e-01 79.6% 71.4%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.65 40.0 4.57e-01 93.5% 85.3%
4oloB00 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.65 38.0 3.99e-01 93.5% 63.1%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 34.0 4.10e-01 78.5% 80.3%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.63 48.0 5.18e-01 100.0% 97.4%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 3.58e-01 74.2% 84.7%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 34.0 3.70e-01 82.8% 63.7%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 39.0 3.91e-01 89.2% 62.8%
2rqkA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 46.0 4.41e-01 98.9% 68.8%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.65e-01 71.0% 93.6%
1whvA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 43.0 4.25e-01 100.0% 70.0%
4qmfD02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.60 42.0 4.28e-01 93.5% 73.9%
4ymhD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 43.0 3.21e-01 79.6% 29.9%
4g08A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.60 37.0 4.15e-01 93.5% 82.9%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 3.63e-01 73.1% 93.0%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 40.0 4.08e-01 71.0% 79.8%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 32.0 3.83e-01 78.5% 79.4%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.32e-01 71.0% 92.9%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.58 31.0 3.03e-01 86.0% 46.5%
3l4jA04 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.57 42.0 4.08e-01 94.6% 70.6%
1d5aA03 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.57 50.0 4.19e-01 100.0% 81.1%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.56 38.0 4.10e-01 83.9% 80.2%
4r16A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 44.0 3.56e-01 86.0% 87.8%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.56 36.0 3.96e-01 94.6% 84.5%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 35.0 3.53e-01 89.2% 62.4%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 34.0 3.63e-01 84.9% 69.0%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 33.0 3.21e-01 84.9% 53.5%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 33.0 3.44e-01 86.0% 64.7%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.62e-01 71.0% 71.2%
5koxA02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 4.45e-01 100.0% 93.0%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 4.20e-01 100.0% 89.0%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 35.0 3.58e-01 90.3% 67.8%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 34.0 3.41e-01 86.0% 60.0%
3ffhA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 45.0 4.05e-01 95.7% 64.4%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 34.0 3.64e-01 84.9% 72.6%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 34.0 3.34e-01 88.2% 58.1%
4hkqA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 43.0 3.74e-01 100.0% 57.6%
7sbeA01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.53 40.0 3.13e-01 83.9% 60.1%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.53 43.0 4.32e-01 90.3% 86.5%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.41e-01 90.3% 58.9%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 31.0 3.31e-01 79.6% 65.9%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.57e-01 89.2% 69.6%
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.52 41.0 4.23e-01 100.0% 87.9%
1i94H01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 33.0 3.62e-01 86.0% 78.2%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.23e-01 74.2% 90.1%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.51 46.0 4.21e-01 100.0% 94.4%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.65e-01 90.3% 74.4%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.28e-01 74.2% 100.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4137642 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.70 41.0 4.86e-01 93.5% 88.3%
3601388 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.67 50.0 5.43e-01 98.9% 96.0%
3997731 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.65 49.0 5.26e-01 100.0% 92.5%
5001113 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 33.0 3.37e-01 80.6% 55.6%
5044658 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 42.0 4.40e-01 100.0% 81.2%
3397248 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.59 52.0 5.18e-01 98.9% 98.9%
5025922 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.58 35.0 3.73e-01 84.9% 68.8%
3412297 2002.1.1.260 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › R1_ABCA1 0.58 51.0 4.70e-01 98.9% 80.6%
3594156 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.57 42.0 4.57e-01 100.0% 96.0%
3282985 101.1.2.508 alpha arrays › HTH › HTH › winged helix domain › PF25872 0.57 34.0 3.59e-01 84.9% 64.7%
4929096 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.57 35.0 3.54e-01 84.9% 60.0%
5069873 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 34.0 3.58e-01 84.9% 64.7%
4928556 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 35.0 3.47e-01 84.9% 57.1%
3297930 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 47.0 4.78e-01 100.0% 95.6%
3593012 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.57 42.0 4.59e-01 100.0% 97.3%
3663293 304.12.1.10 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › ABCA12_C 0.57 41.0 4.51e-01 100.0% 100.0%
4971296 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 36.0 3.84e-01 88.2% 73.8%
3390426 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.57 44.0 4.32e-01 100.0% 77.0%
5039360 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.57 35.0 3.37e-01 84.9% 54.3%
5077205 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.89e-01 86.0% 69.5%
138578 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.56 39.0 3.92e-01 72.0% 78.1%
3613455 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.56 49.0 4.36e-01 100.0% 86.3%
4979355 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 4.12e-01 81.7% 85.5%
4941357 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 34.0 3.61e-01 84.9% 68.8%
4956538 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.56 34.0 3.74e-01 84.9% 74.7%
3600286 304.8.1.54 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.56 41.0 4.44e-01 100.0% 96.0%
3774427 304.8.1.54 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.56 41.0 4.13e-01 100.0% 76.8%
3925479 207.1.1.156 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.56 40.0 2.91e-01 100.0% 26.0%
4926786 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 34.0 3.62e-01 84.9% 70.0%
3710762 304.8.1.54 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.56 40.0 4.37e-01 98.9% 96.0%
3598886 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.55 41.0 4.40e-01 100.0% 97.3%
3993298 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.55 43.0 4.52e-01 100.0% 97.5%
3635087 327.11.2.60 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_SLS1_2 0.55 38.0 3.64e-01 94.6% 59.3%
5077786 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.55 36.0 3.72e-01 84.9% 71.8%
4936304 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 37.0 3.85e-01 87.1% 75.3%
4994983 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 32.0 3.55e-01 83.9% 75.7%
5001357 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 4.22e-01 89.2% 80.0%
5031483 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 32.0 2.76e-01 84.9% 35.5%
5042411 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.54 35.0 3.64e-01 89.2% 71.8%
5070584 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 34.0 3.51e-01 86.0% 66.7%
3284858 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.54 37.0 3.51e-01 71.0% 67.3%
3282605 101.1.2.508 alpha arrays › HTH › HTH › winged helix domain › PF25872 0.53 34.0 3.62e-01 89.2% 73.8%
3589866 101.1.2.66 alpha arrays › HTH › HTH › winged helix domain › Mga 0.53 39.0 4.04e-01 88.2% 83.5%
3863657 192.29.1.26 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › BAG6 0.53 38.0 3.58e-01 75.3% 73.0%
3907036 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.53 41.0 4.32e-01 100.0% 97.5%
4968041 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.53 42.0 3.56e-01 83.9% 83.4%
3603381 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.58e-01 86.0% 90.7%
5066770 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.52 34.0 3.45e-01 88.2% 65.3%
4957231 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 34.0 3.44e-01 84.9% 65.3%
3761481 304.163.1.5 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1, PF26955 0.52 44.0 3.76e-01 98.9% 100.0%
4476660 192.8.1.478 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › BAG6 0.51 37.0 3.41e-01 76.3% 66.4%
3524541 304.163.1.2 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › ACT_13 0.51 43.0 4.33e-01 97.8% 100.0%
3375185 101.1.2.462 alpha arrays › HTH › HTH › winged helix domain › DUF7647 0.51 38.0 3.53e-01 78.5% 74.6%
5031727 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.51 34.0 3.44e-01 86.0% 67.4%
5006536 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.51 33.0 3.41e-01 88.2% 68.9%
5040910 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.51 33.0 3.55e-01 88.2% 77.5%
4869676 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.50 42.0 3.37e-01 98.9% 56.5%