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JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00316
Bact-VirJBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00316
Identity
- Kingdom:
- phage
Quality
46.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 341-399
D2
high
residues 428-482
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8hbfB01 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.87 | 62.0 | 4.16e-01 | 74.5% | 22.7% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.82 | 57.0 | 3.99e-01 | 72.7% | 48.5% |
| 2qtlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.81 | 56.0 | 4.01e-01 | 72.7% | 50.3% |
| 3iylU02 | 1.10.287.1520 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.81 | 60.0 | 6.09e-01 | 78.2% | 86.8% |
| 3v1vA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.79 | 72.0 | 4.39e-01 | 100.0% | 63.7% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.72 | 54.0 | 3.59e-01 | 80.0% | 70.9% |
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.71 | 56.0 | 4.68e-01 | 87.3% | 57.3% |
| 3veaA02 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.71 | 50.0 | 5.13e-01 | 78.2% | 78.8% |
| 2kloA00 | 1.10.10.1420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain | 0.70 | 45.0 | 3.36e-01 | 70.9% | 26.1% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.69 | 46.0 | 3.95e-01 | 70.9% | 42.2% |
| 3c24A02 | 1.10.3640.10 | Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal | 0.68 | 49.0 | 4.03e-01 | 76.4% | 46.0% |
| 1zx3A01 | 1.10.287.1020 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like | 0.65 | 58.0 | 5.00e-01 | 98.2% | 63.5% |
| 1qusA01 | 1.10.8.350 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial muramidase | 0.62 | 42.0 | 3.35e-01 | 70.9% | 79.6% |
| 1nrwA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.59 | 40.0 | 3.15e-01 | 72.7% | 43.1% |
| 3fewX02 | 3.30.1310.40 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › | 0.58 | 43.0 | 3.55e-01 | 78.2% | 66.3% |
| 4mfiA00 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 47.0 | 2.86e-01 | 92.7% | 69.7% |
| 3vokA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 46.0 | 3.28e-01 | 87.3% | 64.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5056276 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.80 | 68.0 | 4.81e-01 | 92.7% | 32.5% |
| 4030551 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.73 | 61.0 | 4.10e-01 | 89.1% | 55.8% |
| 4274974 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.73 | 61.0 | 5.00e-01 | 92.7% | 59.0% |
| 3164403 | 589.1.1.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N | 0.72 | 60.0 | 4.09e-01 | 89.1% | 31.5% |
| 5056432 | 607.1.1.0 ↗ | alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain | 0.72 | 60.0 | 4.58e-01 | 92.7% | 71.2% |
| 3738995 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.70 | 48.0 | 4.51e-01 | 70.9% | 100.0% |
| 3272085 | 206.1.1.16 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › IucA_IucC,FhuF | 0.59 | 50.0 | 2.93e-01 | 96.4% | 32.5% |
| 3588464 | 604.39.1.5 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt | 0.54 | 45.0 | 3.26e-01 | 98.2% | 52.9% |