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JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00317
Bact-VirJBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00317
Identity
- Kingdom:
- phage
Quality
50.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-60
D2
high
residues 100-178
D3
high
residues 193-268
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lifB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.70 | 51.0 | 4.10e-01 | 76.3% | 84.0% |
| 4ywzB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.69 | 49.0 | 4.02e-01 | 76.3% | 91.8% |
| 4pmwA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 47.0 | 4.47e-01 | 97.4% | 64.8% |
| 2hhiA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.64 | 46.0 | 4.00e-01 | 75.0% | 66.9% |
| 1jkfA03 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.63 | 46.0 | 5.04e-01 | 100.0% | 98.3% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.61 | 42.0 | 4.06e-01 | 93.4% | 61.8% |
| 2r4iA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 42.0 | 3.62e-01 | 75.0% | 84.6% |
| 3dxpA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 38.0 | 3.61e-01 | 75.0% | 53.8% |
| 1imuA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.59 | 42.0 | 3.80e-01 | 76.3% | 54.2% |
| 1tu1A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.57 | 46.0 | 3.82e-01 | 92.1% | 61.8% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 42.0 | 4.29e-01 | 100.0% | 81.6% |
| 4n6tA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 40.0 | 3.99e-01 | 75.0% | 78.5% |
| 4fvaC00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.56 | 48.0 | 3.36e-01 | 94.7% | 44.2% |
| 2k75A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 40.0 | 3.64e-01 | 89.5% | 56.3% |
| 3r87A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 42.0 | 3.51e-01 | 81.6% | 89.4% |
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.55 | 46.0 | 3.30e-01 | 96.1% | 75.2% |
| 6krwA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 45.0 | 3.06e-01 | 93.4% | 37.4% |
| 1lyvA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 44.0 | 3.06e-01 | 92.1% | 43.1% |
| 4fvkA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.54 | 45.0 | 2.98e-01 | 98.7% | 94.6% |
| 1sr9A02 | 3.30.160.270 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain | 0.53 | 43.0 | 3.51e-01 | 94.7% | 57.9% |
| 4hrzB00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 44.0 | 3.86e-01 | 97.4% | 72.4% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.52 | 37.0 | 4.15e-01 | 75.0% | 100.0% |
| 4k3yC00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 44.0 | 2.93e-01 | 100.0% | 94.1% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 38.0 | 4.13e-01 | 100.0% | 98.4% |
| 2pwwA00 | 3.30.310.100 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like | 0.51 | 37.0 | 3.32e-01 | 92.1% | 53.0% |
| 1vw4502 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 37.0 | 3.49e-01 | 78.9% | 64.1% |
| 2bi0A02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 43.0 | 3.49e-01 | 94.7% | 78.9% |
| 2hboA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 42.0 | 3.58e-01 | 96.1% | 74.4% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4066540 | 223.1.1.134 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30516 | 0.73 | 53.0 | 3.94e-01 | 76.3% | 65.8% |
| 3390184 | 206.1.1.55 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL | 0.72 | 52.0 | 3.27e-01 | 76.3% | 15.7% |
| 3286735 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.69 | 49.0 | 4.79e-01 | 100.0% | 67.1% |
| 3676791 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 45.0 | 4.59e-01 | 90.8% | 68.0% |
| 3649749 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.66 | 45.0 | 3.18e-01 | 90.8% | 24.1% |
| 5054019 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.65 | 46.0 | 4.77e-01 | 73.7% | 92.9% |
| 4927751 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.64 | 47.0 | 3.81e-01 | 77.6% | 57.9% |
| 3928388 | 633.33.1.1 ↗ | alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz | 0.63 | 37.0 | 2.67e-01 | 73.7% | 20.5% |
| 4593266 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.62 | 41.0 | 4.16e-01 | 84.2% | 69.3% |
| 3446982 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.61 | 44.0 | 3.68e-01 | 76.3% | 84.4% |
| 5076310 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.60 | 50.0 | 3.95e-01 | 92.1% | 51.6% |
| 4028943 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.60 | 41.0 | 2.98e-01 | 72.4% | 51.4% |
| 4047115 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.59 | 40.0 | 3.67e-01 | 90.8% | 53.0% |
| 2418837 | 3880.1.1.2 ↗ | beta barrels › Glycoside hydrolase family 127 C-terminal domain › Glycoside hydrolase family 127 C-terminal domain › Glycoside hydrolase family 127 C-terminal domain › Glyco_hydro127C | 0.59 | 41.0 | 3.39e-01 | 73.7% | 66.2% |
| 3451695 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 42.0 | 4.03e-01 | 76.3% | 71.1% |
| 3839556 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 52.0 | 3.54e-01 | 100.0% | 91.6% |
| 3681964 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.58 | 50.0 | 3.38e-01 | 93.4% | 40.7% |
| 3813787 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 43.0 | 3.83e-01 | 100.0% | 53.5% |
| 4003150 | 1116.1.1.1 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin_dom | 0.58 | 42.0 | 3.25e-01 | 75.0% | 52.7% |
| 3516854 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 50.0 | 4.44e-01 | 100.0% | 71.3% |
| 3653604 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.58 | 49.0 | 3.94e-01 | 96.1% | 83.2% |
| 3673251 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.57 | 46.0 | 3.50e-01 | 86.8% | 49.7% |
| 4089593 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.57 | 48.0 | 4.06e-01 | 94.7% | 72.3% |
| 4304505 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.57 | 47.0 | 4.02e-01 | 94.7% | 71.5% |
| 3962603 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 45.0 | 3.99e-01 | 94.7% | 60.0% |
| 5004264 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.56 | 46.0 | 3.99e-01 | 92.1% | 78.0% |
| 3571085 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 50.0 | 4.29e-01 | 100.0% | 75.2% |
| 4237498 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.56 | 47.0 | 4.08e-01 | 96.1% | 75.2% |
| 3581555 | 633.33.1.1 ↗ | alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz | 0.56 | 50.0 | 3.37e-01 | 100.0% | 60.1% |
| 3400775 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.55 | 49.0 | 4.12e-01 | 97.4% | 93.6% |
| 5036880 | 330.1.1.35 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer | 0.55 | 37.0 | 3.90e-01 | 92.1% | 75.7% |
| 4391625 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.55 | 46.0 | 4.11e-01 | 94.7% | 85.5% |
| 3781402 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.55 | 46.0 | 4.05e-01 | 96.1% | 77.5% |
| 5055280 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.55 | 47.0 | 3.81e-01 | 94.7% | 55.9% |
| 4969719 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.55 | 44.0 | 3.61e-01 | 92.1% | 58.0% |
| 4241432 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.54 | 46.0 | 3.99e-01 | 100.0% | 63.2% |
| 3998298 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 45.0 | 3.29e-01 | 93.4% | 74.8% |
| 3741704 | 719.1.1.2 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF | 0.53 | 47.0 | 3.97e-01 | 100.0% | 80.8% |
| 3217156 | 243.1.1.46 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 | 0.53 | 47.0 | 3.89e-01 | 100.0% | 86.4% |
| 3942438 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.53 | 44.0 | 4.01e-01 | 96.1% | 84.5% |
| 4507316 | 220.1.1.20 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH | 0.51 | 44.0 | 3.94e-01 | 100.0% | 71.3% |
| 3948266 | 223.1.1.67 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7 | 0.51 | 41.0 | 3.17e-01 | 90.8% | 77.3% |
| 4126991 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 44.0 | 4.22e-01 | 98.7% | 83.3% |
| 4838879 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.51 | 36.0 | 3.58e-01 | 90.8% | 71.2% |
| 3849982 | 109.6.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N | 0.50 | 38.0 | 2.42e-01 | 85.5% | 86.3% |