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JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00337

Bact-Vir

JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00337

Identity

Kingdom:
phage

Quality

68.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-86
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.69 43.0 4.12e-01 70.7% 53.9%
4eziA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.67 59.0 4.02e-01 100.0% 42.6%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.66 48.0 3.72e-01 77.3% 41.2%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.64 45.0 4.73e-01 88.0% 85.9%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 43.0 4.03e-01 93.3% 55.8%
1qhlA00 3.40.1140.10 Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › 0.63 49.0 3.66e-01 85.3% 58.6%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.63 43.0 4.71e-01 86.7% 94.7%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 43.0 3.23e-01 70.7% 39.5%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 52.0 3.54e-01 90.7% 37.9%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.61 46.0 3.34e-01 82.7% 88.8%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.60 51.0 4.02e-01 97.3% 58.4%
1zo0A00 3.40.630.60 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.60 42.0 3.67e-01 100.0% 45.2%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.60 40.0 4.58e-01 86.7% 100.0%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 44.0 2.97e-01 80.0% 20.8%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.60 44.0 2.98e-01 90.7% 19.9%
3bxpB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 49.0 3.41e-01 93.3% 40.1%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 44.0 3.37e-01 80.0% 52.0%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 40.0 3.43e-01 70.7% 49.6%
6qpwA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 40.0 3.17e-01 88.0% 34.6%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 50.0 4.23e-01 98.7% 100.0%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.58 41.0 3.35e-01 76.0% 49.0%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.57 50.0 3.97e-01 100.0% 70.2%
1lo7A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 49.0 4.05e-01 97.3% 98.6%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.56 40.0 3.37e-01 77.3% 52.8%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 45.0 3.57e-01 86.7% 80.9%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 49.0 3.13e-01 100.0% 45.3%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 46.0 3.89e-01 90.7% 93.6%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 39.0 3.18e-01 78.7% 37.0%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.55 47.0 3.95e-01 98.7% 97.8%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 46.0 3.00e-01 97.3% 84.6%
1gkaB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 48.0 3.65e-01 97.3% 74.7%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.55 46.0 3.99e-01 96.0% 66.9%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 47.0 4.33e-01 97.3% 87.0%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 36.0 3.15e-01 70.7% 42.7%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 49.0 3.79e-01 100.0% 79.5%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 44.0 2.98e-01 92.0% 64.1%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 47.0 3.58e-01 98.7% 83.1%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 44.0 3.33e-01 90.7% 97.3%
4k02A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 42.0 3.60e-01 86.7% 84.3%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.54 47.0 3.65e-01 100.0% 74.7%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.54 44.0 3.72e-01 93.3% 74.3%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.79e-01 81.3% 78.9%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 45.0 3.02e-01 100.0% 44.4%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.53 39.0 3.81e-01 89.3% 73.2%
5tz6B02 3.10.129.120 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.53 43.0 3.48e-01 100.0% 44.8%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.61e-01 89.3% 58.3%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 45.0 3.02e-01 100.0% 46.5%
3cawA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 45.0 4.23e-01 96.0% 96.7%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3484671 3433.1.1.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.79 43.0 5.10e-01 78.7% 80.0%
3262017 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.78 54.0 3.85e-01 72.0% 43.8%
3736295 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.77 53.0 3.77e-01 70.7% 45.4%
3514202 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.77 52.0 3.71e-01 70.7% 43.7%
3170444 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.77 52.0 3.78e-01 70.7% 46.5%
3607609 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.71 52.0 3.70e-01 76.0% 43.3%
2878158 243.1.1.8 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MlaC 0.71 48.0 3.69e-01 70.7% 34.3%
3616334 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.70 51.0 3.64e-01 78.7% 47.8%
3600787 2008.6.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.68 51.0 3.55e-01 78.7% 32.1%
3181136 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.68 46.0 3.90e-01 70.7% 56.2%
4951451 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 46.0 3.77e-01 73.3% 49.0%
3991847 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 45.0 3.30e-01 72.0% 93.0%
4088781 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.65 44.0 3.35e-01 70.7% 30.6%
146266 295.1.1.8 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3276 0.63 46.0 4.43e-01 76.0% 81.0%
3912181 2004.1.1.174 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Elong_Iki1 0.63 45.0 3.21e-01 74.7% 93.2%
3653935 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.63 51.0 3.34e-01 89.3% 25.2%
3530304 2004.1.1.174 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Elong_Iki1 0.63 43.0 3.04e-01 72.0% 90.0%
3927287 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.62 46.0 4.19e-01 81.3% 61.9%
3710433 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 43.0 3.82e-01 72.0% 51.8%
3173242 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.62 47.0 4.04e-01 93.3% 51.7%
3287191 243.1.1.71 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF8176 0.61 42.0 3.63e-01 78.7% 45.0%
4947615 3604.1.1.0 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.61 48.0 5.10e-01 88.0% 100.0%
4014830 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 41.0 4.68e-01 86.7% 96.4%
3738504 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 46.0 4.07e-01 93.3% 55.5%
3626756 9.1.1.48 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.60 51.0 3.70e-01 94.7% 72.7%
1146580 3308.1.1.2 beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme › CarG-like 0.59 48.0 3.83e-01 90.7% 50.0%
3229203 2484.1.1.50 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.59 46.0 2.85e-01 85.3% 85.5%
4661496 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.59 52.0 3.12e-01 100.0% 40.9%
3897238 12.3.1.42 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.59 44.0 3.09e-01 82.7% 63.8%
4998648 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.59 43.0 3.97e-01 89.3% 61.1%
3185511 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.58 46.0 4.05e-01 86.7% 73.5%
3490456 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 4.14e-01 98.7% 88.3%
3818565 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.58 41.0 3.37e-01 77.3% 47.7%
3217128 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.58 47.0 3.04e-01 89.3% 94.1%
3266046 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.57 41.0 4.43e-01 88.0% 93.3%
3265885 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.57 42.0 3.50e-01 81.3% 66.4%
4465073 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.57 46.0 4.12e-01 88.0% 74.0%
3438374 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 46.0 2.94e-01 89.3% 24.2%
3613616 5.1.4.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.56 49.0 3.10e-01 100.0% 32.8%
3649691 2004.1.1.299 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 0.56 43.0 3.02e-01 84.0% 91.6%
3727439 220.1.1.54 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_18 0.56 45.0 3.75e-01 93.3% 92.4%
3937269 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.56 45.0 3.37e-01 88.0% 46.5%
3191174 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 49.0 3.10e-01 100.0% 72.2%
3606891 5.1.3.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.55 47.0 3.12e-01 98.7% 33.0%
3509038 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 47.0 4.24e-01 92.0% 79.0%
4970458 222.1.1.8 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.55 47.0 3.93e-01 97.3% 96.3%
3887495 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 46.0 3.99e-01 92.0% 69.6%
None 0.54 44.0 2.75e-01 89.3% 57.3%
1390080 220.1.1.32 beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.54 47.0 3.59e-01 100.0% 70.3%
4016196 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.52 41.0 3.44e-01 86.7% 87.4%
5000597 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.52 43.0 3.60e-01 96.0% 75.7%
3902426 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.51 46.0 3.29e-01 100.0% 34.9%
2169 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.51 45.0 2.99e-01 100.0% 59.7%
3875879 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 43.0 3.28e-01 93.3% 77.1%
840 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.50 41.0 3.23e-01 96.0% 47.0%