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JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00360
Bact-VirJBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00360
Identity
- Kingdom:
- phage
Quality
81.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-74
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e0vB01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.64 | 44.0 | 3.25e-01 | 71.7% | 26.7% |
| 4qzvB02 | 2.20.210.30 | Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › | 0.59 | 51.0 | 4.93e-01 | 100.0% | 88.2% |
| 3go9A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.59 | 43.0 | 2.96e-01 | 78.3% | 66.8% |
| 1kyzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 45.0 | 3.80e-01 | 86.7% | 78.6% |
| 1fp5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 38.0 | 3.27e-01 | 70.0% | 99.0% |
| 3duwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 36.0 | 2.56e-01 | 70.0% | 83.6% |
| 3m2tA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 37.0 | 2.88e-01 | 75.0% | 63.8% |
| 2nraC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.16e-01 | 73.3% | 96.1% |
| 3fk5A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 44.0 | 3.46e-01 | 100.0% | 97.9% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.52 | 43.0 | 3.59e-01 | 100.0% | 87.3% |
| 2bj0A00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.52 | 42.0 | 2.92e-01 | 90.0% | 56.7% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.52 | 38.0 | 2.75e-01 | 85.0% | 92.0% |
| 3a7eA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 37.0 | 2.63e-01 | 78.3% | 91.5% |
| 4ic1D00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.51 | 42.0 | 2.96e-01 | 91.7% | 56.3% |
| 2nrqA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.51 | 39.0 | 3.20e-01 | 91.7% | 71.5% |
| 2dpnA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 40.0 | 2.76e-01 | 90.0% | 40.6% |
| 2ogkD00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.51 | 41.0 | 3.29e-01 | 98.3% | 94.4% |
| 4xs9A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 44.0 | 3.28e-01 | 100.0% | 100.0% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 38.0 | 3.10e-01 | 85.0% | 83.6% |
| 3c18A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 4.32e-01 | 100.0% | 96.5% |
| 1sqhA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 38.0 | 2.81e-01 | 83.3% | 51.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5064000 | 3268.1.1.1 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › XdhC_CoxI | 0.68 | 59.0 | 5.13e-01 | 100.0% | 82.1% |
| 4665923 | 3008.1.1.2 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 | 0.61 | 41.0 | 3.68e-01 | 71.7% | 87.8% |
| 5030026 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.61 | 43.0 | 3.77e-01 | 100.0% | 50.0% |
| 3175120 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.60 | 42.0 | 3.46e-01 | 100.0% | 40.9% |
| 4614439 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.60 | 43.0 | 3.92e-01 | 100.0% | 57.5% |
| 4105022 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.59 | 42.0 | 3.65e-01 | 100.0% | 50.0% |
| 4025055 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.59 | 46.0 | 3.92e-01 | 100.0% | 52.6% |
| 4310506 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.58 | 40.0 | 2.74e-01 | 73.3% | 36.9% |
| 4026343 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.58 | 45.0 | 3.83e-01 | 100.0% | 52.6% |
| 3279792 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.57 | 39.0 | 2.77e-01 | 73.3% | 88.8% |
| 5046705 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.57 | 46.0 | 3.82e-01 | 100.0% | 50.5% |
| 4405647 | 304.61.1.2 ↗ | a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Monooxy_af470-like | 0.55 | 46.0 | 3.21e-01 | 93.3% | 46.0% |
| 3784677 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.55 | 37.0 | 2.58e-01 | 71.7% | 37.3% |
| 3197890 | 304.61.1.2 ↗ | a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Monooxy_af470-like | 0.55 | 46.0 | 3.15e-01 | 95.0% | 60.4% |
| 3933162 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.55 | 47.0 | 4.02e-01 | 100.0% | 59.0% |
| 3178823 | 304.61.1.2 ↗ | a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Monooxy_af470-like | 0.55 | 45.0 | 3.23e-01 | 93.3% | 58.5% |
| 3991745 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.54 | 45.0 | 4.10e-01 | 100.0% | 69.4% |
| 4068249 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.54 | 41.0 | 3.78e-01 | 85.0% | 86.3% |
| 4944741 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 41.0 | 3.33e-01 | 91.7% | 51.4% |
| 4965445 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.53 | 48.0 | 3.44e-01 | 100.0% | 97.6% |
| 4570660 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 34.0 | 2.71e-01 | 70.0% | 27.6% |
| 149947 | 7581.1.1.12 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ACP_syn_III_C | 0.52 | 45.0 | 3.49e-01 | 100.0% | 97.2% |
| 3025907 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.52 | 37.0 | 2.55e-01 | 76.7% | 78.9% |
| 1146572 | 304.152.1.1 ↗ | a+b two layers › Alpha-beta plaits › E4-ORF3 › E4-ORF3 › Adeno_E4_ORF3 | 0.52 | 44.0 | 3.65e-01 | 100.0% | 89.7% |
| 3224075 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 40.0 | 2.63e-01 | 100.0% | 20.4% |
| 3289799 | 7581.1.1.12 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ACP_syn_III_C | 0.52 | 44.0 | 3.35e-01 | 98.3% | 96.8% |
| 3250183 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.52 | 41.0 | 3.86e-01 | 100.0% | 71.4% |
| 4932565 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.52 | 36.0 | 3.30e-01 | 76.7% | 97.8% |
| 3843442 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.51 | 35.0 | 2.88e-01 | 73.3% | 63.2% |
| 3957384 | 298.1.1.13 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › AcetDehyd-dimer | 0.51 | 34.0 | 2.76e-01 | 70.0% | 45.2% |
| 3624333 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.51 | 41.0 | 2.76e-01 | 90.0% | 61.7% |
| 3883463 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.51 | 38.0 | 2.60e-01 | 86.7% | 86.4% |
| 3482620 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 38.0 | 2.54e-01 | 83.3% | 24.2% |
| 5051932 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.50 | 36.0 | 3.29e-01 | 100.0% | 57.5% |
| 4878204 | 7581.1.1.6 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C | 0.50 | 42.0 | 3.30e-01 | 100.0% | 99.3% |
| 3662481 | 2492.1.1.11 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 | 0.50 | 39.0 | 3.06e-01 | 90.0% | 63.4% |
| None | — | 0.50 | 35.0 | 2.53e-01 | 78.3% | 80.8% |