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JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00368

Bact-Vir

JBCH_GD18_scaffold_652796_prodigal-single.1__X__X__00368

Identity

Kingdom:
phage

Quality

90.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-70
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p49A03 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.67 50.0 4.39e-01 81.4% 87.0%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 32.0 3.51e-01 81.4% 66.7%
1f7uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 42.0 2.75e-01 87.1% 16.7%
2g7jA00 3.90.1150.40 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 0.56 42.0 3.71e-01 82.9% 86.6%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.56 43.0 3.68e-01 85.7% 80.7%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.55 40.0 3.30e-01 85.7% 39.3%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.55 45.0 3.55e-01 91.4% 75.2%
6j5tB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 43.0 3.69e-01 91.4% 94.2%
3tt2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 41.0 2.77e-01 88.6% 33.0%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.53 45.0 4.16e-01 95.7% 91.0%
6j7cA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 40.0 3.17e-01 85.7% 81.3%
2qecA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.19e-01 91.4% 72.2%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 42.0 3.77e-01 91.4% 98.1%
3v0rA01 2.40.350.20 Mainly Beta › Beta Barrel › AOC barrel-like › 0.52 44.0 3.76e-01 97.1% 73.3%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.50e-01 92.9% 81.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 32.0 3.63e-01 95.7% 91.5%
5o7oC01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.52 40.0 3.39e-01 87.1% 56.8%
3ftbA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 39.0 3.34e-01 81.4% 65.2%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.51 42.0 3.86e-01 95.7% 86.3%
3i9v700 3.30.920.80 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 0.50 38.0 3.23e-01 84.3% 78.0%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 36.0 2.99e-01 78.6% 57.4%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.50 35.0 3.02e-01 75.7% 51.2%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.50 42.0 3.23e-01 98.6% 41.2%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588650 6161.1.1.2 a+b two layers › Uncharacterized virus protein A-100 › Uncharacterized virus protein A-100 › Uncharacterized virus protein A-100 › SWIM 0.85 80.0 7.82e-01 100.0% 98.7%
3436834 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 78.0 5.04e-01 100.0% 46.0%
4928595 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.75 55.0 4.82e-01 92.9% 52.4%
4269668 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.67 40.0 4.36e-01 100.0% 74.5%
3975793 4312.1.1.5 a+b two layers › RelE-like › RelE-like › RelE-like › RelE 0.65 44.0 3.95e-01 70.0% 51.6%
4961197 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.63 44.0 4.44e-01 81.4% 72.9%
4982145 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.63 48.0 4.04e-01 82.9% 66.7%
3926705 6129.1.1.9 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › RGM_C 0.62 46.0 3.47e-01 80.0% 78.3%
5000990 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.62 47.0 3.69e-01 82.9% 70.3%
3199320 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 46.0 3.95e-01 81.4% 90.4%
3556708 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.60 47.0 4.64e-01 85.7% 78.7%
3942405 4312.1.1.5 a+b two layers › RelE-like › RelE-like › RelE-like › RelE 0.60 41.0 3.77e-01 72.9% 70.5%
3227253 331.9.1.8 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 0.59 48.0 4.33e-01 90.0% 100.0%
3626053 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 41.0 3.40e-01 74.3% 80.0%
4993341 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.57 39.0 3.94e-01 70.0% 70.0%
3502940 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 44.0 3.96e-01 85.7% 96.0%
4990212 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 36.0 3.90e-01 91.4% 80.0%
4602126 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 42.0 3.73e-01 82.9% 76.4%
3789865 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 40.0 3.71e-01 75.7% 75.6%
5016456 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.55 44.0 4.12e-01 85.7% 80.0%
1320692 331.21.1.1 a+b two layers › TBP-like › Sporulation inhibitor of replication protein SirA › Sporulation inhibitor of replication protein SirA › SirA 0.55 40.0 3.30e-01 85.7% 39.3%
3587407 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 41.0 3.79e-01 85.7% 82.0%
3860615 376.1.1.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.54 40.0 3.60e-01 80.0% 71.0%
1495182 71.1.1.11 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PNGase_F-II_N 0.54 44.0 3.36e-01 95.7% 40.7%
3711062 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 42.0 3.77e-01 87.1% 87.0%
3843756 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.53 39.0 3.61e-01 80.0% 62.1%
5029448 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 40.0 3.14e-01 82.9% 85.6%
3688114 5.1.4.100 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.53 42.0 2.55e-01 87.1% 90.4%
3262446 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.53 46.0 4.19e-01 97.1% 90.3%
3932457 2005.1.1.7 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.52 37.0 2.50e-01 78.6% 18.3%
4281770 1.1.1.1 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.51 37.0 2.91e-01 82.9% 69.9%
D2 high residues 180-382
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01609.28 best DDE_Tnp_1 70.5 2.40e-19 87.2% 98.0%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.77 54.0 6.15e-01 91.6% 93.4%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.74 53.0 6.14e-01 90.1% 98.7%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.74 54.0 6.01e-01 91.1% 92.6%
2x6nD00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.73 50.0 5.38e-01 92.6% 79.2%
1bcoA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 56.0 5.46e-01 92.1% 91.0%
5cr4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 52.0 5.09e-01 91.6% 79.5%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.61 26.0 3.46e-01 97.5% 71.8%
4ntdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 29.0 3.83e-01 96.6% 81.8%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.58 25.0 3.35e-01 97.5% 71.7%
2hb5A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 38.0 4.34e-01 81.3% 89.3%
1e5xA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 29.0 3.87e-01 92.6% 99.0%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.55 36.0 3.75e-01 83.3% 70.4%
2zsjA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 28.0 3.82e-01 92.6% 100.0%
4k7zA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 25.0 3.20e-01 97.5% 71.4%
5fg3A03 3.40.50.10050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor IF- 2, domain 3 0.54 28.0 3.50e-01 75.9% 82.6%
2obaA00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.53 27.0 3.43e-01 87.2% 81.7%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 29.0 2.72e-01 79.3% 42.4%
3c6aA00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.51 39.0 3.95e-01 89.7% 79.3%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 27.0 3.57e-01 99.0% 99.0%
3dkrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 38.0 3.63e-01 78.3% 91.7%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027997 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.98 96.0 8.63e-01 100.0% 79.9%
4940124 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.96 94.0 7.94e-01 100.0% 68.3%
4974444 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.96 86.0 7.63e-01 99.0% 69.8%
5040335 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.90 84.0 8.44e-01 96.1% 96.1%
4945072 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.88 83.0 7.27e-01 97.5% 74.3%
4451157 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.87 84.0 8.01e-01 100.0% 90.9%
4932086 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.87 77.0 7.79e-01 100.0% 92.5%
4977119 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.86 83.0 7.95e-01 99.5% 93.8%
5005291 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.85 82.0 7.99e-01 100.0% 91.8%
4966198 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.85 67.0 6.18e-01 99.0% 65.9%
4962044 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.85 75.0 6.65e-01 97.5% 68.1%
4968579 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.85 74.0 6.59e-01 98.0% 67.8%
4944889 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 72.0 7.54e-01 87.2% 100.0%
4958657 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.84 60.0 6.84e-01 72.4% 96.8%
3942981 2484.1.1.269 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_4 0.83 79.0 6.32e-01 100.0% 73.0%
5058150 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.82 79.0 7.02e-01 99.0% 74.8%
4514424 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.82 80.0 6.71e-01 100.0% 69.4%
4961486 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.82 78.0 6.18e-01 100.0% 73.5%
4946151 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.82 45.0 6.10e-01 73.4% 100.0%
3949341 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 78.0 6.90e-01 99.5% 73.1%
3587330 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 78.0 6.03e-01 100.0% 75.8%
4958315 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.82 78.0 6.72e-01 100.0% 70.7%
4952725 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.80 51.0 6.19e-01 93.6% 96.3%
4248295 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 75.0 6.10e-01 99.0% 77.0%
5008722 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 74.0 6.30e-01 99.5% 64.9%
5053144 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.79 75.0 6.25e-01 100.0% 71.5%
5021851 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.79 74.0 6.09e-01 99.5% 73.3%
3958652 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 50.0 5.27e-01 70.4% 70.3%
4958703 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.79 75.0 6.29e-01 100.0% 75.9%
3590948 105.1.1.0 alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.78 72.0 6.62e-01 99.0% 76.5%
4009433 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 74.0 5.91e-01 99.5% 73.0%
4375215 2484.1.1.146 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_Tn3 0.78 74.0 6.19e-01 100.0% 64.3%
3970986 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 74.0 6.28e-01 100.0% 67.8%
4958777 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.77 74.0 6.20e-01 100.0% 76.2%
4952918 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.77 36.0 5.36e-01 71.4% 100.0%
4954372 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.77 73.0 6.41e-01 99.5% 75.4%
4933551 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.77 54.0 6.30e-01 94.1% 98.0%
3937782 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.77 51.0 5.65e-01 92.1% 81.8%
4518542 2484.1.1.146 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_Tn3 0.77 73.0 6.10e-01 100.0% 65.5%
3988130 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.76 45.0 5.68e-01 76.4% 94.4%
3924148 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.76 52.0 5.80e-01 92.1% 85.5%
3986284 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.76 57.0 5.88e-01 92.1% 80.5%
3959174 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.76 49.0 5.95e-01 70.0% 97.0%
3283910 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 55.0 6.26e-01 90.1% 97.4%
5002528 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.75 70.0 6.35e-01 97.5% 75.8%
4929499 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.75 55.0 6.10e-01 96.1% 94.4%
3935131 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.75 53.0 5.82e-01 92.1% 87.9%
5060820 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.75 70.0 5.29e-01 100.0% 71.7%
3587332 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.75 70.0 6.12e-01 100.0% 69.8%
3519322 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.74 58.0 5.91e-01 92.1% 82.6%
3958443 2484.1.1.108 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_assoc 0.74 50.0 5.19e-01 73.4% 71.3%
4952913 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 61.0 6.42e-01 100.0% 95.6%
None 0.74 53.0 5.02e-01 72.9% 74.9%
3940128 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 53.0 5.47e-01 92.6% 76.4%
3958247 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 52.0 4.98e-01 72.9% 75.2%
3588285 2484.1.1.202 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 0.73 58.0 5.90e-01 92.6% 83.0%
5027953 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.71 56.0 5.92e-01 99.0% 89.7%
4952496 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.71 53.0 6.01e-01 91.1% 100.0%
3411713 2484.1.1.145 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.71 67.0 5.53e-01 100.0% 60.8%
3928301 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 52.0 5.72e-01 92.6% 90.0%
5030453 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.70 56.0 5.35e-01 100.0% 71.9%
4943224 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 55.0 5.99e-01 99.0% 98.8%
3254993 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 57.0 5.07e-01 100.0% 63.1%
5027917 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.68 56.0 5.33e-01 100.0% 72.5%
3932900 2484.1.1.145 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.68 50.0 5.17e-01 74.4% 92.6%
4927589 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.67 57.0 5.86e-01 92.1% 93.7%
3590896 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 60.0 4.95e-01 97.0% 97.7%
4122250 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 60.0 5.40e-01 99.0% 84.7%
3935879 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 53.0 5.47e-01 92.6% 89.7%
4339297 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 52.0 5.35e-01 92.6% 87.7%
5008723 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.63 52.0 5.55e-01 92.1% 97.7%
4952348 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 56.0 5.72e-01 92.6% 96.9%
4968312 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.63 52.0 5.13e-01 91.1% 81.8%
3939024 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.60 53.0 5.16e-01 92.1% 87.7%
5072529 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.59 27.0 3.84e-01 99.5% 93.3%
5083931 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.54 34.0 3.70e-01 81.3% 71.4%
4944561 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.54 24.0 3.20e-01 97.5% 78.0%
4988089 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.54 36.0 3.77e-01 80.3% 72.1%
4946616 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.52 25.0 3.54e-01 100.0% 98.9%
4996079 2003.4.1.1 a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.51 31.0 3.76e-01 91.6% 92.3%
5071965 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.51 23.0 3.18e-01 97.5% 85.3%
D3 medium residues 123-179
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m3aA00 1.10.10.1900 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like 0.66 52.0 5.06e-01 93.0% 86.6%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 45.0 4.88e-01 91.2% 97.7%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 5.13e-01 98.2% 89.4%
1fexA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 48.0 4.84e-01 93.0% 100.0%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 43.0 4.14e-01 87.7% 66.2%
1dekA02 1.10.238.70 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.60 40.0 3.21e-01 70.2% 39.3%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 40.0 3.76e-01 84.2% 56.3%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 44.0 4.12e-01 84.2% 65.8%
1lkoA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 41.0 3.09e-01 75.4% 85.5%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.57 47.0 3.30e-01 100.0% 39.4%
1yz4B01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 43.0 3.29e-01 91.2% 54.2%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 44.0 4.18e-01 94.7% 80.6%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.55 36.0 3.81e-01 87.7% 84.8%
4cmyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 35.0 2.59e-01 70.2% 74.2%
3adoA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 38.0 2.84e-01 91.2% 92.5%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940124 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.95 89.0 5.39e-01 100.0% 18.8%
3940696 101.1.1.103 alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.75 59.0 6.23e-01 94.7% 100.0%
3931733 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 64.0 5.64e-01 98.2% 70.6%
3924434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 62.0 5.77e-01 100.0% 81.3%
3941666 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.70 60.0 5.55e-01 98.2% 97.3%
4945040 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 5.26e-01 98.2% 83.3%
3946360 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 59.0 5.73e-01 100.0% 89.2%
4931006 101.1.2.599 alpha arrays › HTH › HTH › winged helix domain › ELP3_N 0.68 50.0 4.99e-01 82.5% 78.3%
5049118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 59.0 5.67e-01 100.0% 89.2%
3485812 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 55.0 5.49e-01 94.7% 96.7%
4383273 101.1.1.201 alpha arrays › HTH › HTH › Three-helical HTH › Bot1p 0.66 49.0 3.82e-01 100.0% 35.0%
3485826 101.1.1.46 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_2 0.65 52.0 4.80e-01 93.0% 73.8%
3487276 101.1.4.1 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.60 46.0 3.78e-01 84.2% 48.6%
4201685 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.58 41.0 3.25e-01 75.4% 92.5%
3416926 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.57 39.0 2.78e-01 71.9% 71.8%
3607327 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 47.0 4.71e-01 100.0% 98.3%
4958364 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 41.0 3.58e-01 94.7% 48.4%
1148121 2484.1.1.46 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DGOK 0.56 46.0 3.47e-01 100.0% 52.9%
3961587 191.1.1.1 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 0.54 45.0 3.47e-01 98.2% 87.6%
2800296 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.52 34.0 2.57e-01 94.7% 26.7%