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JF270478.1__AEO00985.1__X__00004

Bact-Vir

JF270478.1__AEO00985.1__X__00004

Identity

Accession:
JF270478 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Psychrobacter_phage_Psymv2

TaxID: 1071177

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-68
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 75.0 5.88e-01 100.0% 58.5%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 74.0 5.86e-01 100.0% 58.2%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 74.0 5.29e-01 100.0% 42.4%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 73.0 5.83e-01 100.0% 60.0%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 72.0 5.58e-01 100.0% 76.3%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 71.0 5.78e-01 100.0% 62.8%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 70.0 5.64e-01 100.0% 58.0%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 68.0 5.35e-01 100.0% 75.2%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 66.0 5.33e-01 100.0% 57.3%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.70 62.0 5.12e-01 100.0% 62.8%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.62 53.0 3.69e-01 100.0% 45.2%
3fcdB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 42.0 3.47e-01 74.2% 46.2%
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 32.0 3.98e-01 90.3% 94.1%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 39.0 4.37e-01 96.8% 93.6%
2rdgA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 46.0 4.39e-01 87.1% 95.8%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 41.0 2.67e-01 79.0% 40.8%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.56 42.0 2.57e-01 83.9% 51.8%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 4.41e-01 96.8% 93.2%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 41.0 2.92e-01 83.9% 76.4%
2k8qA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.49e-01 95.2% 55.2%
3aqlA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 42.0 3.31e-01 90.3% 79.3%
2p6rA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 40.0 2.79e-01 80.6% 32.1%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 40.0 3.88e-01 85.5% 95.7%
3h09B02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.51 43.0 2.60e-01 96.8% 27.1%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.29e-01 93.5% 62.1%
1v8wA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 42.0 3.31e-01 100.0% 77.9%
4gqzA00 2.60.40.3700 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 2.90e-01 82.3% 68.6%
5fl4A00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.51 38.0 2.57e-01 82.3% 69.3%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 34.0 3.60e-01 96.8% 80.0%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 36.0 3.28e-01 88.7% 56.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995742 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.86 79.0 6.39e-01 100.0% 75.5%
4251800 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.83 75.0 5.82e-01 100.0% 54.6%
4860663 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.82 74.0 5.61e-01 100.0% 51.4%
4047098 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.81 73.0 5.82e-01 100.0% 61.7%
3281112 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.80 72.0 5.75e-01 100.0% 60.0%
3015240 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.79 71.0 5.67e-01 100.0% 77.0%
2522057 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 71.0 5.63e-01 100.0% 57.7%
4194202 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.78 70.0 5.51e-01 100.0% 76.0%
4995743 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 67.0 5.44e-01 100.0% 71.7%
4241499 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 50.0 4.32e-01 100.0% 92.2%
3286598 2498.2.1.0 ↗ mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain 0.58 43.0 3.19e-01 82.3% 90.3%
4953054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 3.67e-01 98.4% 58.7%
4995694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 4.17e-01 87.1% 83.6%
3267918 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 4.02e-01 77.4% 83.6%
3609092 633.23.1.23 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.54 36.0 2.72e-01 71.0% 100.0%
3194774 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 37.0 2.54e-01 74.2% 100.0%
3411522 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.53 44.0 4.13e-01 96.8% 85.0%
5063662 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.47e-01 74.2% 95.0%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 37.0 3.59e-01 95.2% 65.7%
4938286 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 44.0 3.62e-01 95.2% 63.5%
3596181 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 36.0 2.55e-01 74.2% 83.1%
3701133 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 35.0 2.50e-01 71.0% 58.3%
4945979 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.51 39.0 2.64e-01 87.1% 23.3%
3626533 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 36.0 2.58e-01 77.4% 83.2%
4032337 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.50 34.0 2.64e-01 93.5% 27.3%
D2 high residues 86-174
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.64 57.0 4.16e-01 100.0% 50.6%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 57.0 4.13e-01 100.0% 50.0%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.63 37.0 4.03e-01 100.0% 69.7%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 56.0 4.12e-01 100.0% 84.0%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.62 56.0 4.04e-01 100.0% 52.2%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 33.0 3.92e-01 87.6% 78.9%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 36.0 4.08e-01 95.5% 78.5%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.59 40.0 4.59e-01 75.3% 100.0%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.59 35.0 3.81e-01 100.0% 71.8%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.59 36.0 3.53e-01 87.6% 55.8%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.58 40.0 3.20e-01 70.8% 92.7%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.57 33.0 3.63e-01 91.0% 71.4%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.56 40.0 4.22e-01 95.5% 82.7%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 30.0 3.66e-01 93.3% 82.1%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 34.0 3.85e-01 93.3% 84.1%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.56 44.0 4.06e-01 87.6% 87.3%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.55 39.0 3.14e-01 73.0% 89.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 33.0 3.62e-01 85.4% 72.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 29.0 3.53e-01 80.9% 89.4%
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.55 35.0 3.63e-01 88.8% 67.4%
5yjlC02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.53 34.0 3.23e-01 87.6% 52.3%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.53 34.0 3.53e-01 87.6% 69.0%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.53 36.0 3.18e-01 71.9% 96.5%
3weoA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.52 40.0 2.97e-01 84.3% 91.1%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.52 36.0 3.10e-01 78.7% 45.3%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.51 35.0 3.55e-01 71.9% 100.0%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.53e-01 83.1% 91.1%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.50 37.0 3.28e-01 79.8% 61.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029787 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.66 58.0 5.26e-01 95.5% 98.3%
3507499 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.66 57.0 4.97e-01 94.4% 100.0%
5028024 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.66 60.0 5.27e-01 100.0% 96.2%
4212381 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.66 60.0 5.20e-01 100.0% 94.1%
1387073 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.65 48.0 4.78e-01 76.4% 96.7%
5023031 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.61 50.0 4.51e-01 88.8% 95.2%
4941299 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.61 36.0 3.75e-01 87.6% 61.2%
1309122 5084.1.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TbpB_B_D 0.58 39.0 3.19e-01 70.8% 93.8%
3330227 3270.1.1.0 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.55 34.0 3.46e-01 88.8% 61.1%
3727852 10.1.1.19 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_leg-like 0.54 48.0 3.48e-01 100.0% 81.2%
4879215 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.53 34.0 3.37e-01 88.8% 60.0%
1734827 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.53 35.0 3.26e-01 87.6% 52.3%
3886961 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.53 41.0 3.77e-01 84.3% 85.0%
4332725 295.1.1.2 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA 0.53 37.0 3.37e-01 74.2% 65.4%
3346613 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.53 34.0 3.47e-01 88.8% 64.4%
3822364 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.53 34.0 3.53e-01 88.8% 68.2%
3825119 3270.1.1.0 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.53 34.0 3.48e-01 87.6% 65.6%
3903928 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 40.0 3.16e-01 83.1% 48.7%
4927832 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 37.0 3.49e-01 74.2% 84.5%
3648118 3270.1.1.0 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.52 32.0 3.28e-01 87.6% 61.1%
3062889 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 35.0 2.87e-01 70.8% 90.2%
185415 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.51 35.0 3.55e-01 71.9% 100.0%